1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agagctggctgttgcaagtttagattgtcaatgttgtgtatgatatgttaagagtcttggcgacctggcactgatgtgtgcttgcgggttctttaaacagATAATGAACATGCAGCCTCAGCTACAGACATTTCTGAACCAGAATCCTCAATTTAGGGACATGATGCAGAATCCCGATTTCATTCGACAAATGAGCAGTC
species | Physcomitrella patens |
transcript | PP1S70_281V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCAGATGATGCAAGGAATTTTGTCCAATCCTCAATATATGAATCAG ATAATGAACATGCAGCCTCAGCTACAGACATTTCTGAACCAGAATCCTCAAEST: gi|67728027|gb|BJ978286.1|BJ978286
genomic: TGCAGCAGATGATGCAAGGAATTTTGTCCAATCCTCAATATATGAATCAGgtaagttctc ... ctttaaacagATAATGAACATGCAGCCTCAGCTACAGACATTTCTGAACCAGAATCCTCAA
EST: CCTCAATATATGAATCAG ATAATGAACATGCAGCCTCAGCTACAGACATTTCTGAACCAGAATCCTCAAEST: gi|162185317|gb|FC360891.1|FC360891
genomic: CCTCAATATATGAATCAGgtaagttctc ... ctttaaacagATAATGAACATGCAGCCTCAGCTACAGACATTTCTGAACCAGAATCCTCAA
EST: TGCAGCAGATGATGCAAGGAATTTTGTCCAATCCTCAATATATGAATCAG ATAATGAACATGCAGCCTCAGCTACAGACATTTCTGAACCAGAATCCTCAAEST: gi|208374329|gb|DC948389.1|DC948389
genomic: TGCAGCAGATGATGCAAGGAATTTTGTCCAATCCTCAATATATGAATCAGgtaagttctc ... ctttaaacagATAATGAACATGCAGCCTCAGCTACAGACATTTCTGAACCAGAATCCTCAA
EST: TGCAGCAGATGATGCAAGGNATTTTGTCCAATCCTCAATATATGAATCAG ATAATGAACATGCAGCCTCAGCTACAGACATTTCTGAACCAGAATCCTCAA
genomic: TGCAGCAGATGATGCAAGGAATTTTGTCCAATCCTCAATATATGAATCAGgtaagttctc ... ctttaaacagATAATGAACATGCAGCCTCAGCTACAGACATTTCTGAACCAGAATCCTCAA
tgttaagagtcttggcgacctggcactgatgtgtgcttgcgggttctttaaacagATAATGAACATGCAGCCTCAGCTACAGACATTTCTGAACCAGAATCCTCAATTTAGGGACATGATGCAGAATCCCGATTTCATTCGACAAATGAGCAGTC
cactgat putative branch site (score: 4)
ttcttt putative PPT
ttctttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagctggctgttgcaagtttagattgtcaatgttgtgtatgatatgttaagagtcttggcgacctggcactgatgtgtgcttgcgggttctttaaacagATAATGAACATGCAGCCTCAGCTACAGACATTTCTGAACCAGAATCCTCAATTTAGGGACATGATGCAGAATCCCGATTTCATTCGACAAATGAGCAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - -tgttgca