1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgcgttgtaatatttgaaccggtgtgaatacttcgagcaaacagtcattgacactgaaatctatattgccgattattaattatagtatctcatttcatctgcagGATGAGTTGCGTGATGCTGTCCTTCTTGTGTTTGCGAACAAACAAGATTTGCCGAATGCAATGAACGCTGCAGAGATTACCGATAAGCTTGGTCTCCACT
species | Physcomitrella patens |
transcript | PP1S70_130V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGATCGTGTTGTGGAAGCCAGAGACGAGCTTCATCGGATGTTAAATGAG GATGAGTTGCGTGATGCTGTCCTTCTTGTGTTTGCGAEST: gi|162230343|gb|FC406907.1|FC406907
genomic: GAGATCGTGTTGTGGAAGCCAGAGACGAGCTTCATCGGATGTTAAATGAGgtacgcgttg ... tcatctgcagGATGAGTTGCGTGATGCTGTCCTTCTTGTGTTTGCGA
EST: GAGATCGTGTTGTGGAAGCCAGAGACGAGCTTCATCGGATGTTAAATGAG GATGAGTTGCGTGATGCTGTCCTTCTTGTGTTTGCGAACAAACAAGATTTGEST: gi|22492401|gb|BU052324.1|BU052324
genomic: GAGATCGTGTTGTGGAAGCCAGAGACGAGCTTCATCGGATGTTAAATGAGgtacgcgttg ... tcatctgcagGATGAGTTGCGTGATGCTGTCCTTCTTGTGTTTGCGAACAAACAAGATTTG
EST: GAGATCGTGTTGTGGAAGCCAGAGACGAGCTTCATCGGATGTTAAATGAG GATGAGTTGCGTGATGCTGTCCTTCTTGTGTTTGCGAACAAACAAGATTTTEST: gi|67571616|gb|BJ944440.1|BJ944440
genomic: GAGATCGTGTTGTGGAAGCCAGAGACGAGCTTCATCGGATGTTAAATGAGgtacgcgttg ... tcatctgcagGATGAGTTGCGTGATGCTGTCCTTCTTGTGTTTGCGAACAAACAAGATTTG
EST: GAGATCGTGTTGTGGAAGCCAGAGACGAGCTTCATCGGATGTTAAATGAG GATGAGTTGCGTGATGCTGTCCTTCTTGTGTTTGCGAACAAACAAGATTTGEST: gi|18326102|gb|BJ158101.1|BJ158101
genomic: GAGATCGTGTTGTGGAAGCCAGAGACGAGCTTCATCGGATGTTAAATGAGgtacgcgttg ... tcatctgcagGATGAGTTGCGTGATGCTGTCCTTCTTGTGTTTGCGAACAAACAAGATTTG
EST: GAGATCGTGTTGTGGAAGCCAGAGACGAGCTTCATCGGATGTTAAATGAG GATGAGTTGCGTGATGCTGTC
genomic: GAGATCGTGTTGTGGAAGCCAGAGACGAGCTTCATCGGATGTTAAATGAGgtacgcgttg ... tcatctgcagGATGAGTTGCGTGATGCTGTC
gacactgaaatctatattgccgattattaattatagtatctcatttcatctgcagGATGAGTTGCGTGATGCTGTCCTTCTTGTGTTTGCGAACAAACAAGATTTGCCGAATGCAATGAACGCTGCAGAGATTACCGATAAGCTTGGTCTCCACT
tattaat putative branch site (score: 45)
tctcatttc putative PPT
attattaattatagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgttgtaatatttgaaccggtgtgaatacttcgagcaaacagtcattgacactgaaatctatattgccgattattaattatagtatctcatttcatctgcagGATGAGTTGCGTGATGCTGTCCTTCTTGTGTTTGCGAACAAACAAGATTTGCCGAATGCAATGAACGCTGCAGAGATTACCGATAAGCTTGGTCTCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG