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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtagctcttaaagctggctgtgtcttagtctcccgactactctcgtagcgtgttgtgtttctgtatagtacttgaagtttccggatgttggctattgctgggtgcttaattgtgtcgtgatatacagGTAAAATCAAAGAAAACGCTAAAACAGTGTAGAAGAAGTGAGGCGGCGAGGGAGAGAACCAATCTAGAGAAATTGCGGCGGACAAAGTCTCAAACTTCAG

Basic information

species Physcomitrella patens
transcript PP1S6_474V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37844663|gb|BJ602671.1|BJ602671
EST:     TGTGAACTGCATGGGACAG                         GTAAAATCAAAGAAAACGCTAAAACAGTGTAGAAGAAGTGAGGCGGCGAGG
genomic: TGTGAACTGCATGGGACAGgttggtagct ... tgatatacagGTAAAATCAAAGAAAACGCTAAAACAGTGTAGAAGAAGTGAGGCGGCGAGG
EST: gi|37844805|gb|BJ602813.1|BJ602813
EST:     GTGAACTGCATGGGACAG                         GTAAAATCAAAGAAAACGNTAAAACAGTGTAGAAGAAGTGAGGCGGCGAGG
genomic: GTGAACTGCATGGGACAGgttggtagct ... tgatatacagGTAAAATCAAAGAAAACGCTAAAACAGTGTAGAAGAAGTGAGGCGGCGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagtttccggatgttggctattgctgggtgcttaattgtgtcgtgatatacagGTAAAATCAAAGAAAACGCTAAAACAGTGTAGAAGAAGTGAGGCGGCGAGGGAGAGAACCAATCTAGAGAAATTGCGGCGGACAAAGTCTCAAACTTCAG
                               gcttaat  putative branch site (score: 4)
                                 ttaattgt  TA-rich tract