1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cacgttgattttaaacaaaaatgcagtttattctgatcttttttgtatggttttgtgagtgtgtgtttaactatggggtgctctgcatggtgaatcgcagGAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATGCCATCAAAGAGTACAG
species | Physcomitrella patens |
transcript | PP1S6_467V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCTCAGTGCGGATTCAGTGCCATGGTTGTTCACATATTGGATGAATATG GAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATGEST: gi|67695473|gb|BJ955706.1|BJ955706
genomic: ACCTCAGTGCGGATTCAGTGCCATGGTTGTTCACATATTGGATGAATATGgtaatggatc ... tgaatcgcagGAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATG
EST: ACCTCAGTGCGGATTCAGTGCCATGGTTGTTCACATATTGGATGAATATG GAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATGEST: gi|67572106|gb|BJ944930.1|BJ944930
genomic: ACCTCAGTGCGGATTCAGTGCCATGGTTGTTCACATATTGGATGAATATGgtaatggatc ... tgaatcgcagGAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATG
EST: ACCTCAGTGCGGATTCAGTGCCATGGTTGTTCACATATTGGATGAATATG GAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATGEST: gi|162174353|gb|FC350424.1|FC350424
genomic: ACCTCAGTGCGGATTCAGTGCCATGGTTGTTCACATATTGGATGAATATGgtaatggatc ... tgaatcgcagGAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATG
EST: ACCTCAGTGCGGATTCAGTGCCATGGTTGTTCACATATTGGATGAATATG GAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATGEST: gi|208352698|gb|DC921432.1|DC921432
genomic: ACCTCAGTGCGGATTCAGTGCCATGGTTGTTCACATATTGGATGAATATGgtaatggatc ... tgaatcgcagGAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATG
EST: ACCTCAGTGCGGATTCAGTGCCATGGTTGTTCACATATTGGATGAATATG GAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATG
genomic: ACCTCAGTGCGGATTCAGTGCCATGGTTGTTCACATATTGGATGAATATGgtaatggatc ... tgaatcgcagGAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATG
tatggttttgtgagtgtgtgtttaactatggggtgctctgcatggtgaatcgcagGAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATGCCATCAAAGAGTACAG
gtttaac putative branch site (score: 7)
tttaactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacgttgattttaaacaaaaatgcagtttattctgatcttttttgtatggttttgtgagtgtgtgtttaactatggggtgctctgcatggtgaatcgcagGAGTACGGTATAAGACGAGGAATGTTCTGTCCGACCCGGAGCTTAGAAATGCCATCAAAGAGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT