1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agggtttaatctcaattaggaatagcatgtttactactactgttagctgacatattcgctcttttaatatttatttatttatatcgctgtccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
species | Physcomitrella patens |
transcript | PP1S6_409V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACCEST: gi|208382259|gb|DC919247.1|DC919247
genomic: ATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
EST: TGATANGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACCEST: gi|208348042|gb|DC905365.1|DC905365
genomic: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
EST: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACCEST: gi|100430815|gb|BY978411.1|BY978411
genomic: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
EST: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACCEST: gi|208391260|gb|DC933521.1|DC933521
genomic: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
EST: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACCEST: gi|208373818|gb|DC936589.1|DC936589
genomic: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
EST: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACCEST: gi|208360397|gb|DC930778.1|DC930778
genomic: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
EST: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACCEST: gi|100379138|gb|BY986594.1|BY986594
genomic: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
EST: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACCEST: gi|208374248|gb|DC945294.1|DC945294
genomic: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
EST: TGATAGGTNTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACCEST: gi|100416820|gb|BY993105.1|BY993105
genomic: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
EST: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACCEST: gi|100417855|gb|BY975687.1|BY975687
genomic: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
EST: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACCEST: gi|162203521|gb|FC380437.1|FC380437
genomic: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
EST: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCG ACTGGTGGTTATAGCGAAGATATGATTCCCACC
genomic: TGATAGGTCTGCAGAACGCTGGGAAAACATCGCTTGTCAATGTTATTGCGgtatgtatct ... ccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
gctgacatattcgctcttttaatatttatttatttatatcgctgtccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
ttttaat putative branch site (score: 7)
ctgtcctttt putative PPT
atattcgctcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggtttaatctcaattaggaatagcatgtttactactactgttagctgacatattcgctcttttaatatttatttatttatatcgctgtccttttgcagACTGGTGGTTATAGCGAAGATATGATTCCCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA