1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tccaagttattgagggattgatgtagtttctattcaaaatgaattcgtagtaagagattgcagatgttgacttaagattggttatggatgacgtctgcagACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTGTACCTTACT
species | Physcomitrella patens |
transcript | PP1S6_365V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGATGAGCAAGGTCAAAGCGTGTGGCACTTTGAGTCTTTGGATCAACAG ACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTGEST: gi|208398129|gb|DC908358.1|DC908358
genomic: TGGATGAGCAAGGTCAAAGCGTGTGGCACTTTGAGTCTTTGGATCAACAGgttggttgtc ... acgtctgcagACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTG
EST: TGGATGAGCAAGGTCAAAGCGTGTGGCACTTTGAGTCTTTGGATCAACAG ACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTGEST: gi|18344360|gb|BJ176400.1|BJ176400
genomic: TGGATGAGCAAGGTCAAAGCGTGTGGCACTTTGAGTCTTTGGATCAACAGgttggttgtc ... acgtctgcagACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTG
EST: TGGATGAGCAAGGTCAAAGCGTGTGGCACTTTGAGTCTTTGGATCAACAG ACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTGEST: gi|208389372|gb|DC953210.1|DC953210
genomic: TGGATGAGCAAGGTCAAAGCGTGTGGCACTTTGAGTCTTTGGATCAACAGgttggttgtc ... acgtctgcagACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTG
EST: TGGATGAGCAAGGTCAAAGCGTGTGGCACTTTGAGTCTTTGGATCAACAG ACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTGEST: gi|208355168|gb|DC922242.1|DC922242
genomic: TGGATGAGCAAGGTCAAAGCGTGTGGCACTTTGAGTCTTTGGATCAACAGgttggttgtc ... acgtctgcagACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTG
EST: TGGATGAGCAAGGTCAAAGCGTGTGGCACTTTGAGTCTTTGGATCAACAG ACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTGEST: gi|37823559|gb|BJ581625.1|BJ581625
genomic: TGGATGAGCAAGGTCAAAGCGTGTGGCACTTTGAGTCTTTGGATCAACAGgttggttgtc ... acgtctgcagACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTG
EST: TGGATCAACAG ACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTG
genomic: TGGATCAACAGgttggttgtc ... acgtctgcagACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTG
cgtagtaagagattgcagatgttgacttaagattggttatggatgacgtctgcagACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTGTACCTTACT
tgttgac putative branch site (score: 7)
ttaagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaagttattgagggattgatgtagtttctattcaaaatgaattcgtagtaagagattgcagatgttgacttaagattggttatggatgacgtctgcagACCTTGGAGACATTGAACAAGAAAGATGCTTGGCTATTCTGGTGGACGCTGTACCTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA