Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaggacgaaatcccgcaactctaatttcttcatgtgaaactgttacatactgacgggaacgtttcaagtgcattctacagataatataaccctaacttttatgtggtgacgtaattggtctctgttagAGTTCAGGGGAAGTATGATGCGACGAAGCCTCACTCAATCACCGTCTTCGATGTGGGTGTAGATGGGTTTCTGACCAATCGGCGCCTGTTTGCCTCCGTT

Basic information

species Physcomitrella patens
transcript PP1S6_359V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162273546|gb|FC449691.1|FC449691
EST:     TCCCACGACGAGAAGCATCTCTATGTCACCGACACCGGATTTGCTGTCGG                         AGTTCAGGGGAAGTATGATGCGACGAAGCCTCACTCAATCACCGTCTTCGA
genomic: TCCCACGACGAGAAGCATCTCTATGTCACCGACACCGGATTTGCTGTCGGgtgcaggacg ... tctctgttagAGTTCAGGGGAAGTATGATGCGACGAAGCCTCACTCAATCACCGTCTTCGA
EST: gi|162245116|gb|FC421590.1|FC421590
EST:     TCCCACGACGAGAAGCATCTTTATGTCACCGACACCGGATTTGCTGTCGG                         AGTTCAGGGGAAGAATGATGCGACGAAGCCTCACTCAATCACCGTTTTCGA
genomic: TCCCACGACGAGAAGCATCTCTATGTCACCGACACCGGATTTGCTGTCGGgtgcaggacg ... tctctgttagAGTTCAGGGGAAGTATGATGCGACGAAGCCTCACTCAATCACCGTCTTCGA
EST: gi|37838536|gb|BJ596544.1|BJ596544
EST:     TCCCACGACGAGAAGCATCTCTATGTCACCGACACCGGATTTGCTGTCGG                         AGTTCAGGGGAAGTATGATGCGACGAAGCCTCACTCAATCACCGTCTTCGA
genomic: TCCCACGACGAGAAGCATCTCTATGTCACCGACACCGGATTTGCTGTCGGgtgcaggacg ... tctctgttagAGTTCAGGGGAAGTATGATGCGACGAAGCCTCACTCAATCACCGTCTTCGA
EST: gi|162245117|gb|FC421591.1|FC421591
EST:     TCCCACGACGAGAAGCATCTCTATGTCACCGACACCGGATTTGCTGTCGG                         AGTTCAGGGGAAGAATGATGCGACGAAGCCTCACTCAATCACCGTCTTCGA
genomic: TCCCACGACGAGAAGCATCTCTATGTCACCGACACCGGATTTGCTGTCGGgtgcaggacg ... tctctgttagAGTTCAGGGGAAGTATGATGCGACGAAGCCTCACTCAATCACCGTCTTCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctacagataatataaccctaacttttatgtggtgacgtaattggtctctgttagAGTTCAGGGGAAGTATGATGCGACGAAGCCTCACTCAATCACCGTCTTCGATGTGGGTGTAGATGGGTTTCTGACCAATCGGCGCCTGTTTGCCTCCGTT
                ccctaac  putative branch site (score: 2)
                                             tctctgtt  putative PPT
     agataatataa  TA-rich tract