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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatttttgtgaggtgttcaatacttagaggtatgactttcgttaatcagaaacaagtacccaactccaaaattaacttcgtgctaggactttgcaacagCTTGTTCACCATTGTCGAGAGATCTGCGGGTGGCCATCATTGACAGTTCCAAACCAATGGCCGCACCAAAGCATGACCCCAAGGCCGTTCCAGACCAACG

Basic information

species Physcomitrella patens
transcript PP1S6_302V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100444725|gb|BY982554.1|BY982554
EST:     GGTTATCGTTGGTGGAGGAATGGTTGGTGCAGCAGTCGGCTGTGGCCTTG                         CTTGTTCACCATTGTCGAGAGATCTGCGGGTGGCCATCATTGACAGTTCCA
genomic: GGTTATCGTTGGTGGAGGAATGGTTGGTGCAGCAGTCGGCTGTGGCCTTGgtatgtatct ... tttgcaacagCTTGTTCACCATTGTCGAGAGATCTGCGGGTGGCCATCATTGACAGTTCCA
EST: gi|100426269|gb|BY958812.1|BY958812
EST:     GGTTATCGTTGGTGGAGGAATGGTTGGTGCAGCAGTCGGCTGTGGCCTTG                         CTTGTTCACCATTGTCGAGAGATCTGCGGGTGGCCATCATTGACAGTTCCA
genomic: GGTTATCGTTGGTGGAGGAATGGTTGGTGCAGCAGTCGGCTGTGGCCTTGgtatgtatct ... tttgcaacagCTTGTTCACCATTGTCGAGAGATCTGCGGGTGGCCATCATTGACAGTTCCA
EST: gi|100386339|gb|BY988006.1|BY988006
EST:     GGTTATCGTTGGTGGAGGAATGGTTGGTGCAGCAATCGGCTGTGGCCTTG                         CTTGTTCACCATTGTCGAGAGATCTGCGGGTGGC
genomic: GGTTATCGTTGGTGGAGGAATGGTTGGTGCAGCAGTCGGCTGTGGCCTTGgtatgtatct ... tttgcaacagCTTGTTCACCATTGTCGAGAGATCTGCGGGTGGC
EST: gi|208380026|gb|DC914576.1|DC914576
EST:     GGTTATCGTTGGTGGAGGAATGGTTGGTGCAGCAGTCGGCTGTGGCCTTG                         CTTGTTCACCATTGTCGAGAGATCTGCGGGTGGCCATCATTGACAGTTCCA
genomic: GGTTATCGTTGGTGGAGGAATGGTTGGTGCAGCAGTCGGCTGTGGCCTTGgtatgtatct ... tttgcaacagCTTGTTCACCATTGTCGAGAGATCTGCGGGTGGCCATCATTGACAGTTCCA
EST: gi|100417753|gb|BY975636.1|BY975636
EST:     GGTTATCGTTGGTGGAGGAATGGTTGGTGCAGCAGTCGGCTGTGGCCTTG                         CTTGTTCACCATTGTCGAGAGATCTGCGGGTGGCCATCATTGACAGTTCCA
genomic: GGTTATCGTTGGTGGAGGAATGGTTGGTGCAGCAGTCGGCTGTGGCCTTGgtatgtatct ... tttgcaacagCTTGTTCACCATTGTCGAGAGATCTGCGGGTGGCCATCATTGACAGTTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagaaacaagtacccaactccaaaattaacttcgtgctaggactttgcaacagCTTGTTCACCATTGTCGAGAGATCTGCGGGTGGCCATCATTGACAGTTCCAAACCAATGGCCGCACCAAAGCATGACCCCAAGGCCGTTCCAGACCAACG
                         aattaac  putative branch site (score: 2)
                       aaaattaactt  TA-rich tract