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...tgccctagaagtatctagttcatgttgcgatctaattccctttctgtgaatgaaaacagtactaagtgtaattacttttctgcttggttgagaggaacagATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTTGAGTGTGAGTTTTTCCTTCTAAAGAAAAGTTCGGAGATTGAGATTGCCG
species | Physcomitrella patens |
transcript | PP1S6_256V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAG ATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTTEST: gi|67575346|gb|BJ948170.1|BJ948170
genomic: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAGgtatgaaaca ... agaggaacagATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTT
EST: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAG ATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTTEST: gi|162254959|gb|FC431144.1|FC431144
genomic: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAGgtatgaaaca ... agaggaacagATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTT
EST: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAG ATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTTEST: gi|18325382|gb|BJ157378.1|BJ157378
genomic: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAGgtatgaaaca ... agaggaacagATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTT
EST: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAG ATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTTEST: gi|67572539|gb|BJ945363.1|BJ945363
genomic: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAGgtatgaaaca ... agaggaacagATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTT
EST: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAG ATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTTEST: gi|67570874|gb|BJ943698.1|BJ943698
genomic: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAGgtatgaaaca ... agaggaacagATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTT
EST: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAG ATCGCTAGAGCTGCTGAGEST: gi|22491955|gb|BU051878.1|BU051878
genomic: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAGgtatgaaaca ... agaggaacagATCGCTAGAGCTGCTGAG
EST: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAG ATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTT
genomic: TGAATGATACTCCTGTGCAGCAATCACCTCGCGAGGTCTTGAAAAACCAGgtatgaaaca ... agaggaacagATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTT
gtgaatgaaaacagtactaagtgtaattacttttctgcttggttgagaggaacagATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTTGAGTGTGAGTTTTTCCTTCTAAAGAAAAGTTCGGAGATTGAGATTGCCG
taattactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccctagaagtatctagttcatgttgcgatctaattccctttctgtgaatgaaaacagtactaagtgtaattacttttctgcttggttgagaggaacagATCGCTAGAGCTGCTGAGATGGGACCCGGATACCACATGAAGACTGGTGTTGAGTGTGAGTTTTTCCTTCTAAAGAAAAGTTCGGAGATTGAGATTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT