1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caggcgaagctgggtttggtgcatttccagtggcaggttgtgtggttgatggttgttggtgtttggaaggccaggggatgacattgatgtacatgttcagGTGAAGGAGGTAGCTCCGGCAGCAAGGAAGAGAGATGCCCGGTTGTCGTTCGCCTTTGTGTACCCTGACCGACACGGTCGCAACGTGATTCGCACG
species | Physcomitrella patens |
transcript | PP1S69_145V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCAAATCTACACATGGCGGGACGCCACTTTGCGGGAGCTAACTGATTTG GTGAAGGAGGTAGCTCCGGCAGCAAGGAAGAGAGATGCCCGGTTGTCGTTCEST: gi|162275608|gb|FC451324.1|FC451324
genomic: TTCAAATCTACACATGGCGGGACGCCACTTTGCGGGAGCTAACTGATTTGgtaaggatgg ... acatgttcagGTGAAGGAGGTAGCTCCGGCAGCAAGGAAGAGAGATGCCCGGTTGTCGTTC
EST: TTCAAATCTACACATGGCGGGACGCCACTTTGCGGGAGCTAACTGATTTG GTGAAGGAGGTAGCTCCGGCAGCAAGGAAGAGAGATGCCCGGTTGTCGTTCEST: gi|18372613|gb|BJ204215.1|BJ204215
genomic: TTCAAATCTACACATGGCGGGACGCCACTTTGCGGGAGCTAACTGATTTGgtaaggatgg ... acatgttcagGTGAAGGAGGTAGCTCCGGCAGCAAGGAAGAGAGATGCCCGGTTGTCGTTC
EST: TTCAAATCTACACATGGCGGGACGCCACTTTGCGGGAGCTAACTGATTTG GTGAAGGAGGTAGCTCCGGCAGCAAGGAAGAGAGATGCCCCGGTTGTCGTT
genomic: TTCAAATCTACACATGGCGGGACGCCACTTTGCGGGAGCTAACTGATTTGgtaaggatgg ... acatgttcagGTGAAGGAGGTAGCTCCGGCAGCAAGGAAGAGAGATGCCC-GGTTGTCGTT
ttgatggttgttggtgtttggaaggccaggggatgacattgatgtacatgttcagGTGAAGGAGGTAGCTCCGGCAGCAAGGAAGAGAGATGCCCGGTTGTCGTTCGCCTTTGTGTACCCTGACCGACACGGTCGCAACGTGATTCGCACG
cattgat putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggcgaagctgggtttggtgcatttccagtggcaggttgtgtggttgatggttgttggtgtttggaaggccaggggatgacattgatgtacatgttcagGTGAAGGAGGTAGCTCCGGCAGCAAGGAAGAGAGATGCCCGGTTGTCGTTCGCCTTTGTGTACCCTGACCGACACGGTCGCAACGTGATTCGCACG
- - - - - - - - tggtgca