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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatataaatttatccattgatttaaaaatagctctatgtaacagcagtgcgagggctgttcgtttcagctgggttaattctccttgcatattcattacagGTTCAGGCTGTGCTGCTTTTATTGGGTGGCCGAGAGATACCTCCAGGCATGTCAGGTGGCAATGTTTCCAGCCATCATCATCACAAG

Basic information

species Physcomitrella patens
transcript PP1S69_103V6.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162193633|gb|FC371238.1|FC371238
EST:     ATGTGTNTGATGC-GTGCCCCCCTGAGAAG                         GTTCAGGCTGTGCTGCTTTTATTGGGTGGCCGAGAGATACCTCCAGGCATG
genomic: ATGTGTTTGATGCGGTG-CCCCCTGAGAAGgtaaattatc ... ttcattacagGTTCAGGCTGTGCTGCTTTTATTGGGTGGCCGAGAGATACCTCCAGGCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgcgagggctgttcgtttcagctgggttaattctccttgcatattcattacagGTTCAGGCTGTGCTGCTTTTATTGGGTGGCCGAGAGATACCTCCAGGCATGTCAGGTGGCAATGTTTCCAGCCATCATCATCACAAG
                          ggttaat  putative branch site (score: 4)
                                          atattcatta  TA-rich tract