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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtgtagtactaatgctgttgtgtctatcgtgattcacatatcaggcaaatgcaaatgtatgtacaaatttcaattgatgtacttgttgttattatgtagTGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCATGATGGCAGCCAATTATCTGCATACCTGAGAGATTCGACCGCTACACCAC

Basic information

species Physcomitrella patens
transcript PP1S68_186V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37829256|gb|BJ587268.1|BJ587268
EST:     ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAA                         TGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
genomic: ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAAgtgagaatct ... tattatgtagTGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
EST: gi|162261716|gb|FC437005.1|FC437005
EST:     ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAA                         TGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
genomic: ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAAgtgagaatct ... tattatgtagTGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
EST: gi|37843820|gb|BJ601828.1|BJ601828
EST:     ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAA                         TGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
genomic: ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAAgtgagaatct ... tattatgtagTGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
EST: gi|162261717|gb|FC437006.1|FC437006
EST:     ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAA                         TGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
genomic: ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAAgtgagaatct ... tattatgtagTGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
EST: gi|18342492|gb|BJ174527.1|BJ174527
EST:     ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAA                         TGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
genomic: ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAAgtgagaatct ... tattatgtagTGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
EST: gi|18354393|gb|BJ186449.1|BJ186449
EST:     ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAA                         TGGAAAGAAGACGGACTTTCACATTGAGCCTGAGATGACGTTGGAGCTCAT
genomic: ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAAgtgagaatct ... tattatgtagTGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
EST: gi|162218199|gb|FC395010.1|FC395010
EST:     ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAA                         TGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
genomic: ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAAgtgagaatct ... tattatgtagTGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
EST: gi|15728031|gb|BI740585.1|BI740585
EST:     ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAA                         TGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT
genomic: ATTCTGGAGAAAGTGTGCCAGTACTTCTACTGGTTTTTGCAATGTTCCAAgtgagaatct ... tattatgtagTGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaatgcaaatgtatgtacaaatttcaattgatgtacttgttgttattatgtagTGGAAAGAAGACGGACTTTCACATTGAGCCTGAAATGACGTTGGAGCTCATGATGGCAGCCAATTATCTGCATACCTGAGAGATTCGACCGCTACACCAC
                           aattgat  putative branch site (score: 4)
                 tacaaatttcaatt  TA-rich tract