Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgtcgctggattatgttgtcttcgattggacattgagtgtcgtggatttaaatgtttctagtagtatcacattctagaaaggccaatgctggcgttagacagttgcagtttctcacatgcgtgcgtcctgtgacgcggctgcctccttatgggggcctgtaacataatgcgtgtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGACTTGGGCTCGCACTTAACTTCTCAGTGTTCTACTATGAGATTTTGAACT

Basic information

species Physcomitrella patens
transcript PP1S67_176V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S67_176V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ35972 (Selaginella moellendorffii), 3'ss of exon 3
gtgtgtgtcgctggattatgttgtcttcgattggacattgagtgtcgtggatttaaatgtttctagtagtatcacattctagaaaggccaatgctggcgttagacagttgcagtttctcacatgcgtgcgtcctgtgacgcggctgcctccttatgggggcctgtaacat---aatgcgtgtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGACTTGGGCTCGCACTTAACTTCTCAGTGTTCTACTATGAGATTTTGAACT
                                                                                                                       |    ||    ||   |  || |   |     ||   ||   || |||  |     || | ||     ||||| ||  |  |||| ||  |||| ||  |  | || || || || || || |||||||| ||||| ||||||||||| |||||||| |||||  | ||||
---------------------------------------------------------------------------------------------------------------------gtaagctcgcaaatctctttgcgtgatcgttgtttt---ggtttctataagttttgggtgtgcgttgtttcagGCCGCCACTGATACTGCTTCGACCGATCTGCCTCCTACGCATCCAATTCGGCTTGGGCTGGCACTGAACTTCTCAGTTTTCTACTACGAGATACTCAACT

upper sequence: PP1S67_176V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ36243 (Selaginella moellendorffii), 3'ss of exon 3
gtgtgtgtcgctggattatgttgtcttcgattggacattgagtgtcgtggatttaaatgtttctagtagtatcacattctagaaaggccaatgctggcgttagacagttgcagtttctcacatgcgtgcgtcctgtgacgcggctgcctccttatgggggcctgtaacat---aatgcgtgtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGACTTGGGCTCGCACTTAACTTCTCAGTGTTCTACTATGAGATTTTGAACT
                                                                                                                       |    ||    ||   |  || |   |     ||   ||   || |||  |     || | ||     ||||| ||  |  |||| ||  |||| ||  |  | || || || || || || |||||||| ||||| ||||||||||| |||||||| |||||  | ||||
---------------------------------------------------------------------------------------------------------------------gtaagctcgcaaatctctttgcgtgatcgttgtttt---ggtttctataagttttgggtgtgcgttgtttcagGCCGCCACTGATACTGCTTCGACCGATCTGCCTCCTACGCATCCAATTCGGCTTGGGCTGGCACTAAACTTCTCAGTTTTCTACTACGAGATACTCAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162265043|gb|FC440922.1|FC440922
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|37836964|gb|BJ594972.1|BJ594972
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|67698866|gb|BJ959099.1|BJ959099
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162242420|gb|FC416150.1|FC416150
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|18338245|gb|BJ170269.1|BJ170269
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|37824917|gb|BJ582983.1|BJ582983
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|37824545|gb|BJ582611.1|BJ582611
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162230671|gb|FC406094.1|FC406094
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|18337976|gb|BJ170000.1|BJ170000
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|7067273|gb|AW497128.1|AW497128
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162277839|gb|FC454302.1|FC454302
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208396682|gb|DC929033.1|DC929033
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162224456|gb|FC399832.1|FC399832
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|37832037|gb|BJ590049.1|BJ590049
EST:     GGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: GGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|18338543|gb|BJ170567.1|BJ170567
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|67699804|gb|BJ960037.1|BJ960037
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208367542|gb|DC943945.1|DC943945
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162174284|gb|FC350667.1|FC350667
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|37827194|gb|BJ585206.1|BJ585206
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208357329|gb|DC949931.1|DC949931
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162167056|gb|FC342518.1|FC342518
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162260947|gb|FC438004.1|FC438004
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162174283|gb|FC350666.1|FC350666
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162259102|gb|FC436409.1|FC436409
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|67698970|gb|BJ959203.1|BJ959203
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|37830904|gb|BJ588916.1|BJ588916
EST:     GGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCCACCCACCCTATCCG
genomic: GGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCG-CCCACCCACCCTATCCG
EST: gi|162265042|gb|FC440921.1|FC440921
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|37825061|gb|BJ583127.1|BJ583127
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|67691537|gb|BJ951770.1|BJ951770
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCNTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208360989|gb|DC957496.1|DC957496
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208397882|gb|DC916189.1|DC916189
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|18336658|gb|BJ168681.1|BJ168681
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208365472|gb|DC954713.1|DC954713
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162162877|gb|FC338113.1|FC338113
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208364787|gb|DC943647.1|DC943647
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208382964|gb|DC927714.1|DC927714
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162242247|gb|FC418447.1|FC418447
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208346498|gb|DC917451.1|DC917451
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162241145|gb|FC414163.1|FC414163
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208349647|gb|DC917825.1|DC917825
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162229444|gb|FC405830.1|FC405830
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208387528|gb|DC953270.1|DC953270
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208356273|gb|DC957349.1|DC957349
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162230670|gb|FC406093.1|FC406093
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208387631|gb|DC953373.1|DC953373
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208366430|gb|DC943906.1|DC943906
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|22492501|gb|BU052424.1|BU052424
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|18333689|gb|BJ165704.1|BJ165704
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208371040|gb|DC955916.1|DC955916
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208365818|gb|DC951053.1|DC951053
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208392097|gb|DC946165.1|DC946165
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162259101|gb|FC436408.1|FC436408
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208386680|gb|DC929126.1|DC929126
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|18340333|gb|BJ172361.1|BJ172361
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208351274|gb|DC921553.1|DC921553
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208397909|gb|DC916664.1|DC916664
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162229445|gb|FC405831.1|FC405831
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162242248|gb|FC418448.1|FC418448
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|37853249|gb|BJ611257.1|BJ611257
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162242421|gb|FC416151.1|FC416151
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162210235|gb|FC386421.1|FC386421
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162277838|gb|FC454301.1|FC454301
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208393871|gb|DC946109.1|DC946109
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208366539|gb|DC954847.1|DC954847
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|18338407|gb|BJ170431.1|BJ170431
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|37839299|gb|BJ597307.1|BJ597307
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCCTATCCG
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCA-CCCTATCCG
EST: gi|208363087|gb|DC946942.1|DC946942
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162173997|gb|FC350512.1|FC350512
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208366918|gb|DC951405.1|DC951405
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162173996|gb|FC350511.1|FC350511
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162167055|gb|FC342517.1|FC342517
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208382673|gb|DC919827.1|DC919827
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|37828810|gb|BJ586822.1|BJ586822
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208375111|gb|DC944850.1|DC944850
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162243339|gb|FC417040.1|FC417040
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|162260946|gb|FC438003.1|FC438003
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208349293|gb|DC918029.1|DC918029
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208364977|gb|DC947119.1|DC947119
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208382373|gb|DC927907.1|DC927907
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208371871|gb|DC951703.1|DC951703
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
EST: gi|208375272|gb|DC945014.1|DC945014
EST:     CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAG                         GCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA
genomic: CCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 51

GAAGGGTGATTACTATCGTTACCTTGCCGAGTTCAAGACCGGAAACGATAGGAAAGAAGCCGCTGACCAATCTTTGAAGGCTTATCAGgtgtgtgtcg ... gtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGACTTGGGCTCGCACTTAACTTCTCAGTGTTCTACTATGAGATTTTGAACT




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgacgcggctgcctccttatgggggcctgtaacataatgcgtgtgtgcgcagGCTGCATCCAATACAGCCACGACGGACTTAGCGCCCACCCACCCTATCCGACTTGGGCTCGCACTTAACTTCTCAGTGTTCTACTATGAGATTTTGAACT
                             ctgtaac  putative branch site (score: 51)
                                taacataat  TA-rich tract