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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggtcactcctatttttgtggcatcatctttgtcaaatgacatgaataactcagctttgttgaatgtatttttttgttctattagaggtcccttactttgtgtcacttgtttatggtgacaatgatcgagttagatgtttattcgctttgttgctgtggtaatttgcagAAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGGCTATGGTATGGCTAATACAAGGGTGCCAAGCAGGTGACTCCCTTGTTTT

Basic information

species Physcomitrella patens
transcript PP1S65_2V6.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100388923|gb|BY988799.1|BY988799
EST:     GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCG                         AAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGG
genomic: GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCGgtaagtggtc ... taatttgcagAAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGG
EST: gi|67692649|gb|BJ952882.1|BJ952882
EST:     CCTGCAGCATCGATCCTAACACTTACCG                         AAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGG
genomic: CCTGCAGCATCGATCCTAACACTTACCGgtaagtggtc ... taatttgcagAAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGG
EST: gi|67507918|gb|BJ940793.1|BJ940793
EST:     GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCG                         AAGAACAACCTAGTGCAGTGATGAA
genomic: GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCGgtaagtggtc ... taatttgcagAAGAACAACCTAGTGCAGTGATGAA
EST: gi|100413675|gb|BY974934.1|BY974934
EST:     GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCG                         AAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGG
genomic: GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCGgtaagtggtc ... taatttgcagAAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgacaatgatcgagttagatgtttattcgctttgttgctgtggtaatttgcagAAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGGCTATGGTATGGCTAATACAAGGGTGCCAAGCAGGTGACTCCCTTGTTTT
                    atgtttatt  TA-rich tract