1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgtgacggttgataggtagcgaatgtgcggggtgacgggtgcgctgagttgatggtgtggcggtgattttgatggtggtgtgatggtggttgtgcgcagTGAACGCGAATGAGTGCTTGATGACGAAGATGCAAGAGGTGTCTCTGAACTACCACTTCTCGGTGGAGCAGAGGGTGGGGTCCGCGACGTACGGTTTCTT
species | Physcomitrella patens |
transcript | PP1S65_194V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGGTGCACAATTCGAATCTGGCACTTGTACAAGCTCGATGGAAATTTG TGAACGCGAATGAGTGCTTGATGACGAAGATGCAAGAGGTGTCTCTGAACTEST: gi|100387749|gb|BY951749.1|BY951749
genomic: TCTGGTGCACAATTCGAATCTGGCACTTGTACAAGCTCGATGGAAATTTGgtaagtttgc ... ttgtgcgcagTGAACGCGAATGAGTGCTTGATGACGAAGATGCAAGAGGTGTCTCTGAACT
EST: TCTGGTGCACAATTCGAATCTGGCACTTGTACAAGCTCGATGGAAATTTG TGAACGCGAATGAGTGCTTGATGACGAAGATGCAAGAGGTGTCTCTGAACTEST: gi|100450218|gb|CJ974153.1|CJ974153
genomic: TCTGGTGCACAATTCGAATCTGGCACTTGTACAAGCTCGATGGAAATTTGgtaagtttgc ... ttgtgcgcagTGAACGCGAATGAGTGCTTGATGACGAAGATGCAAGAGGTGTCTCTGAACT
EST: TCTGGTGCACAATTCGAATCTGGCACTTGTACAAGCTCGATGGAAATTTG TGAACGCGAATGAGTGCTTGATGACGAAGATGCAAGAGGTGTCTCTGAACTEST: gi|100432630|gb|BY978670.1|BY978670
genomic: TCTGGTGCACAATTCGAATCTGGCACTTGTACAAGCTCGATGGAAATTTGgtaagtttgc ... ttgtgcgcagTGAACGCGAATGAGTGCTTGATGACGAAGATGCAAGAGGTGTCTCTGAACT
EST: TCTGGTGCACAATTCGAATCTGGCACTTGTACAAGCTCGATGGAAATTTG TGAACGCGAATGAGTGCTTGATGACGAAGATGCAAGAGGTGTCTCTGAACT
genomic: TCTGGTGCACAATTCGAATCTGGCACTTGTACAAGCTCGATGGAAATTTGgtaagtttgc ... ttgtgcgcagTGAACGCGAATGAGTGCTTGATGACGAAGATGCAAGAGGTGTCTCTGAACT
tgagttgatggtgtggcggtgattttgatggtggtgtgatggtggttgtgcgcagTGAACGCGAATGAGTGCTTGATGACGAAGATGCAAGAGGTGTCTCTGAACTACCACTTCTCGGTGGAGCAGAGGGTGGGGTCCGCGACGTACGGTTTCTT
ttttgat putative branch site (score: 29)
attttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgacggttgataggtagcgaatgtgcggggtgacgggtgcgctgagttgatggtgtggcggtgattttgatggtggtgtgatggtggttgtgcgcagTGAACGCGAATGAGTGCTTGATGACGAAGATGCAAGAGGTGTCTCTGAACTACCACTTCTCGGTGGAGCAGAGGGTGGGGTCCGCGACGTACGGTTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG