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gtgagttttcggactctgatttttctacttgaagaaatttgcacattgtcattgtgtatagtagatttggcaagaatccattttttgattctcaccccactgttgtctttcattgagttgcagCAAGCTATCCAACATGGGACTGAATGGGAAGGTGGAGGGATGGGTGTTGCAGAAGTTTCAACACCTCTCTGTGCT
species | Physcomitrella patens |
transcript | PP1S64_28V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAACCAACTGGCTGGGCGTTACTTGTGATGGGACCTTCGTCACCTCAAT CAAGCTATCCAACATGGGAATGAATGGGAAGGTGGAGGGATGGGGTGTTGCEST: gi|18372728|gb|BJ204330.1|BJ204330
genomic: GGAACCAACTGGCTGGGCGTTACTTGTGATGGGACCTTCGTCACCTCAATgtgagttttc ... tgagttgcagCAAGCTATCCAACATGGGACTGAATGGGAAGGTGGAGGGATGGG-TGTTGC
EST: GGAACCAACTGGCTGGGCGTTACTTGTGATGGGACCTTCGTCACCTCAAT CAAGCTATCCAACATGGGAATGAATGGGAAGGTGGAGGGATGGGTGTTGCAEST: gi|18331940|gb|BJ163952.1|BJ163952
genomic: GGAACCAACTGGCTGGGCGTTACTTGTGATGGGACCTTCGTCACCTCAATgtgagttttc ... tgagttgcagCAAGCTATCCAACATGGGACTGAATGGGAAGGTGGAGGGATGGGTGTTGCA
EST: GCGTTACTTGTGATGGGACCTTCGTCACCTCAAT CAAGCTATCCAACATGGGACTGAATGGGAAGGTGGAGGGATGGGTGTTGCA
genomic: GCGTTACTTGTGATGGGACCTTCGTCACCTCAATgtgagttttc ... tgagttgcagCAAGCTATCCAACATGGGACTGAATGGGAAGGTGGAGGGATGGGTGTTGCA
ggcaagaatccattttttgattctcaccccactgttgtctttcattgagttgcagCAAGCTATCCAACATGGGACTGAATGGGAAGGTGGAGGGATGGGTGTTGCAGAAGTTTCAACACCTCTCTGTGCT
ttctcac putative branch site (score: 2)
tctttcatt putative PPT
attttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcggactctgatttttctacttgaagaaatttgcacattgtcattgtgtatagtagatttggcaagaatccattttttgattctcaccccactgttgtctttcattgagttgcagCAAGCTATCCAACATGGGACTGAATGGGAAGGTGGAGGGATGGGTGTTGCAGAAGTTTCAACACCTCTCTGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT