1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctttccagggattaaatacctttgtgtatgttcgtgcagcactttcttaagtatgattgggatttgtgacatataatccttttaccttggttttctgcagCTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGCTTGCAAAGGATGAGAAAGGGAACTCTTCAGAG
species | Physcomitrella patens |
transcript | PP1S64_201V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGCCCAGATGATCGGAAGAGTCGAGATTTCTTCTGTAAACGTCATT CTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGCEST: gi|67718899|gb|BJ969158.1|BJ969158
genomic: GAAGAGCCCAGATGATCGGAAGAGTCGAGATTTCTTCTGTAAACGTCATTgtaagtattc ... ttttctgcagCTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGC
EST: GAAGAGCCCAGATGATCGGAAGAGTCGAGATTTCTTCTGTAAACGTCATT CTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGCEST: gi|162158903|gb|FC334789.1|FC334789
genomic: GAAGAGCCCAGATGATCGGAAGAGTCGAGATTTCTTCTGTAAACGTCATTgtaagtattc ... ttttctgcagCTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGC
EST: GAAGAGCCCAGATGATCGGAAGAGTCGAGATTTCTTCTGTAAACGTCATT CTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGCEST: gi|100420625|gb|BY993434.1|BY993434
genomic: GAAGAGCCCAGATGATCGGAAGAGTCGAGATTTCTTCTGTAAACGTCATTgtaagtattc ... ttttctgcagCTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGC
EST: GAAGAGCCCAGATGATCGGAAGAGTCGAGATTTCTTCTGTAAACGTCATT CTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGCEST: gi|162210481|gb|FC386777.1|FC386777
genomic: GAAGAGCCCAGATGATCGGAAGAGTCGAGATTTCTTCTGTAAACGTCATTgtaagtattc ... ttttctgcagCTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGC
EST: GAAGAGCCCAGATGATCGGAAGAGTCGAGATTTCTTCTGTAAACGTCATT CTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGC
genomic: GAAGAGCCCAGATGATCGGAAGAGTCGAGATTTCTTCTGTAAACGTCATTgtaagtattc ... ttttctgcagCTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGC
cttaagtatgattgggatttgtgacatataatccttttaccttggttttctgcagCTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGCTTGCAAAGGATGAGAAAGGGAACTCTTCAGAG
ttttctgc CT-rich tract
atataatcctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttccagggattaaatacctttgtgtatgttcgtgcagcactttcttaagtatgattgggatttgtgacatataatccttttaccttggttttctgcagCTCTTGTTGTATACCTTCCAAAACCAAAAGTTGATAAACGTAAGAGTTTGCTTGCAAAGGATGAGAAAGGGAACTCTTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - tgcagca