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gtgagataattcgccgtattgcagaattactcttgtggccgatttaaactgattcacttgttaggtccgacgcctttggagtttaaattcagctagttcatgttcccaacggcttgttttacctcattaaatgcaatgtgctttggtatttaatggtttgtgatgacgttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGACTCGGCAAAGAG
species | Physcomitrella patens |
transcript | PP1S63_54V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTG GTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGAEST: gi|208363504|gb|DC935269.1|DC935269
genomic: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTGgtgagataat ... gttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGA
EST: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTG GTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGAEST: gi|100356137|gb|BY946215.1|BY946215
genomic: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTGgtgagataat ... gttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGA
EST: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTG GTAGCACTCAATCTGGACTTGGCANGTGTGGAGTCATTCGTTAAGGACCGAEST: gi|100401167|gb|BY990864.1|BY990864
genomic: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTGgtgagataat ... gttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGA
EST: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTG GTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGAEST: gi|18330798|gb|BJ162804.1|BJ162804
genomic: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTGgtgagataat ... gttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGA
EST: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTG GTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTEST: gi|18328338|gb|BJ160342.1|BJ160342
genomic: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTGgtgagataat ... gttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGT
EST: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTG GTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGAEST: gi|208376362|gb|DC932272.1|DC932272
genomic: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTGgtgagataat ... gttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGA
EST: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTG GTAGCACTCAATCTGGACTNGGCAGGTGTGGAGTCATTCGTTAAGGACCGAEST: gi|162235868|gb|FC412419.1|FC412419
genomic: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTGgtgagataat ... gttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGA
EST: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTG GTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGAEST: gi|18346689|gb|BJ178734.1|BJ178734
genomic: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTGgtgagataat ... gttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGA
EST: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCAGTAAAAGTGGACTG GTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGAEST: gi|162219070|gb|FC394653.1|FC394653
genomic: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTGgtgagataat ... gttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGA
EST: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTG GTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGAEST: gi|100402496|gb|BY954865.1|BY954865
genomic: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTGgtgagataat ... gttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGA
EST: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTG GTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGA
genomic: TAGTTGTTAAACCTGATATGTTATTTGGCAAGCGCGGTAAAAGTGGACTGgtgagataat ... gttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGA
ctcattaaatgcaatgtgctttggtatttaatggtttgtgatgacgttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGACTCGGCAAAGAG
tatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagataattcgccgtattgcagaattactcttgtggccgatttaaactgattcacttgttaggtccgacgcctttggagtttaaattcagctagttcatgttcccaacggcttgttttacctcattaaatgcaatgtgctttggtatttaatggtttgtgatgacgttgatgcagGTAGCACTCAATCTGGACTTGGCAGGTGTGGAGTCATTCGTTAAGGACCGACTCGGCAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG