1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaattgactgtcgtttgtaacgtagagcagtttcatcatatggtgcatgtgaagtgaagttttacttagtctgaggtatgttgggtttgttgtgggccagGACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAG
species | Physcomitrella patens |
transcript | PP1S63_215V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAAGAAGTATGGCGGTCTTATGCCCAAGAAGCCTCCCTTGATCTCCAAG GACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAGEST: gi|18336957|gb|BJ168980.1|BJ168980
genomic: AAAAGAAGTATGGCGGTCTTATGCCCAAGAAGCCTCCCTTGATCTCCAAGgtatttctga ... tgtgggccagGACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAG
EST: AAAAGAAGTATGGCGGTCTTATGCCCAAGAAGCCTCCCTTGATCTCCAAG GACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAGEST: gi|162259557|gb|FC435484.1|FC435484
genomic: AAAAGAAGTATGGCGGTCTTATGCCCAAGAAGCCTCCCTTGATCTCCAAGgtatttctga ... tgtgggccagGACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAG
EST: AAAAGAAGTATGGCGGTCTTATGCCCAAGAAGCCTCCCTTGATCTCCAAG GACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAGEST: gi|162259556|gb|FC435483.1|FC435483
genomic: AAAAGAAGTATGGCGGTCTTATGCCCAAGAAGCCTCCCTTGATCTCCAAGgtatttctga ... tgtgggccagGACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAG
EST: AAAAGAAGTATGGCGGTCTTATGCCCAAGAAGCCTCCCTTGATCTCCAAG GACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAGEST: gi|18337165|gb|BJ169189.1|BJ169189
genomic: AAAAGAAGTATGGCGGTCTTATGCCCAAGAAGCCTCCCTTGATCTCCAAGgtatttctga ... tgtgggccagGACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAG
EST: AAAAGAAGTATGGCGGTCTTATGCCCAAGAAGCCTCCCTTGATCTCCAAG GACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAG
genomic: AAAAGAAGTATGGCGGTCTTATGCCCAAGAAGCCTCCCTTGATCTCCAAGgtatttctga ... tgtgggccagGACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAG
catgtgaagtgaagttttacttagtctgaggtatgttgggtttgttgtgggccagGACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAG
ttttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattgactgtcgtttgtaacgtagagcagtttcatcatatggtgcatgtgaagtgaagttttacttagtctgaggtatgttgggtttgttgtgggccagGACCACGAGCGTGCTTTCTTTGATTCAGCTGACTGGGCCCTTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA