1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctatagatattgtgatgaatgtggtgtcttaaaatatattttgctatcttctaatggtgaaacatgtgtgagttgacatcacatgtggggacttcgacagATCAAAAGAGAAATCAAGATCCTGCAAAACCTCTGTGGGGGTCCCAATATTGTGAAGCTTTTGGACATCGTTCGAGATCAGCAATCAAAGACACCCAGTC
species | Physcomitrella patens |
transcript | PP1S63_208V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAGTGAGCGTTGCGTTATTAAGATTTTGAAGCCAGTGAAGNNNNNNNNG ATCAAAAGAGAAATCAAGATCCTGCAAAACCTCTGTGGGGGTCCCAATATTEST: gi|22133071|gb|BQ827530.1|BQ827530
genomic: ACAGTGAGCGTTGCGTTATTAAGATTTTGAAGCCAGTGAAGAAAAAAAAGgtaccaagct ... acttcgacagATCAAAAGAGAAATCAAGATCCTGCAAAACCTCTGTGGGGGTCCCAATATT
EST: ACAGTGAGCGTTGCGTTATTAAGATTTTGAAGCCAGTGAAGNNNNNNNNG ATCAAAAGAGAAATCAAGATCCTGCAAAACCTCTGTGGGGGTCCCAATATTEST: gi|162151402|gb|FC327531.1|FC327531
genomic: ACAGTGAGCGTTGCGTTATTAAGATTTTGAAGCCAGTGAAGAAAAAAAAGgtaccaagct ... acttcgacagATCAAAAGAGAAATCAAGATCCTGCAAAACCTCTGTGGGGGTCCCAATATT
EST: ACAGTGAGCGTTGCGTTATTAAGATTTTGAAGCCAGTGAAGNNNNNNNNG ATCAAAAGAGAAATCAAGATCCTGCAAAACCTCTGTGGGGGTCCCAATATT
genomic: ACAGTGAGCGTTGCGTTATTAAGATTTTGAAGCCAGTGAAGAAAAAAAAGgtaccaagct ... acttcgacagATCAAAAGAGAAATCAAGATCCTGCAAAACCTCTGTGGGGGTCCCAATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatagatattgtgatgaatgtggtgtcttaaaatatattttgctatcttctaatggtgaaacatgtgtgagttgacatcacatgtggggacttcgacagATCAAAAGAGAAATCAAGATCCTGCAAAACCTCTGTGGGGGTCCCAATATTGTGAAGCTTTTGGACATCGTTCGAGATCAGCAATCAAAGACACCCAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgt