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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatgtgatgcgttcaaggttgaggctcttgaaatctttggtggggatagttttggaagtcgaagtggcttttgattcctagttgggttccggtgtccagGTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAGCTTTGTTCTGATAGTTATCCTAACCACGTCTCATTCACCACCTACGAAA

Basic information

species Physcomitrella patens
transcript PP1S62_94V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162251336|gb|FC427978.1|FC427978
EST:     TTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAG                         GTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAG
genomic: GTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAGgtttcacctc ... cggtgtccagGTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAG
EST: gi|162150866|gb|FC327346.1|FC327346
EST:     TTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAG                         GTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAG
genomic: GTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAGgtttcacctc ... cggtgtccagGTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAG
EST: gi|162179908|gb|FC355979.1|FC355979
EST:     TTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAG                         GTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAG
genomic: GTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAGgtttcacctc ... cggtgtccagGTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatagttttggaagtcgaagtggcttttgattcctagttgggttccggtgtccagGTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAGCTTTGTTCTGATAGTTATCCTAACCACGTCTCATTCACCACCTACGAAA
                        ttttgat  putative branch site (score: 4)
                        ttttgatt  TA-rich tract