1 5' 3' | 2 5' 3' | 3 5' 3' |
...acacgtgatggcttggcattgggtttggggttttagagggtgggatgttgcaaggacgctgaattgtttggttaatgcaattgggggctgtgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAGGAGGAGGCAGGAGCCGCTGAGTTCGCTGCCGTGGAGTACCCAGCCCCGG
species | Physcomitrella patens |
transcript | PP1S59_133V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATG GTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAGEST: gi|100439438|gb|BY961933.1|BY961933
genomic: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATGgtgagtggaa ... tgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAG
EST: TTGCAAATGCGAGGGACGATCAGCGCGGGCCA-GCCCATGG-ATGTGATG GTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAEST: gi|208377522|gb|DC922625.1|DC922625
genomic: TTGCAAATGCGAGGAACGATCAGCGCGG-CCAAGCC-ATGGGATGTGATGgtgagtggaa ... tgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCA
EST: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATG GTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAGEST: gi|67716287|gb|BJ966547.1|BJ966547
genomic: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATGgtgagtggaa ... tgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAG
EST: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATG GTGGACCTCTTCTTTTACAGAGAGCCCGATGEST: gi|162160077|gb|FC335947.1|FC335947
genomic: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATGgtgagtggaa ... tgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATG
EST: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATG GTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAGEST: gi|208347925|gb|DC917618.1|DC917618
genomic: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATGgtgagtggaa ... tgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAG
EST: NTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATG GTGGACTTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGANEST: gi|208399572|gb|DC908753.1|DC908753
genomic: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATGgtgagtggaa ... tgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAG
EST: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATG GTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAGEST: gi|67693121|gb|BJ953354.1|BJ953354
genomic: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATGgtgagtggaa ... tgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAG
EST: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATG GTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAGEST: gi|67724804|gb|BJ975063.1|BJ975063
genomic: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATGgtgagtggaa ... tgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAG
EST: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATG GTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAGEST: gi|162248750|gb|FC422822.1|FC422822
genomic: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATGgtgagtggaa ... tgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAG
EST: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATG GTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAGEST: gi|162248749|gb|FC422821.1|FC422821
genomic: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATGgtgagtggaa ... tgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAG
EST: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATG GTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAG
genomic: TTTTGCAAATGCGAGGAACGATCAGCGCGGCCAAGCCATGGGATGTGATGgtgagtggaa ... tgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAG
tgttgcaaggacgctgaattgtttggttaatgcaattgggggctgtgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAGGAGGAGGCAGGAGCCGCTGAGTTCGCTGCCGTGGAGTACCCAGCCCCGG
ggttaat putative branch site (score: 8)
aattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacgtgatggcttggcattgggtttggggttttagagggtgggatgttgcaaggacgctgaattgtttggttaatgcaattgggggctgtgcgttacagGTGGACCTCTTCTTTTACAGAGAGCCCGATGAAGGCAAGGACCGCGATGAGGAGGAGGCAGGAGCCGCTGAGTTCGCTGCCGTGGAGTACCCAGCCCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - -tgttgca