1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtactctttcgttgtctgattgctcacatactcttgatgatatcatgttgagcagtgtcttttgaacagtatccatattgattcatcgttggttttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCCGTGAAGAACAAGGGCAAATTGCTGAAGCCGCAGAATGCATGCAAGAAG
species | Physcomitrella patens |
transcript | PP1S58_256V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAG ATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCEST: gi|100438193|gb|BY961700.1|BY961700
genomic: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAGgtactctttc ... ttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATC
EST: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAG ATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCEST: gi|208367351|gb|DC939867.1|DC939867
genomic: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAGgtactctttc ... ttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATC
EST: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAG ATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCEST: gi|208350568|gb|DC910373.1|DC910373
genomic: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAGgtactctttc ... ttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATC
EST: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAG ATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCEST: gi|208363544|gb|DC939749.1|DC939749
genomic: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAGgtactctttc ... ttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATC
EST: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAG ATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCEST: gi|100418836|gb|BY975763.1|BY975763
genomic: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAGgtactctttc ... ttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATC
EST: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAG ATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCEST: gi|100385804|gb|BY950998.1|BY950998
genomic: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAGgtactctttc ... ttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATC
EST: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAG ATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCEST: gi|162225703|gb|FC401845.1|FC401845
genomic: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAGgtactctttc ... ttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATC
EST: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAG ATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCEST: gi|162269559|gb|FC445115.1|FC445115
genomic: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAGgtactctttc ... ttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATC
EST: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAG ATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCEST: gi|18344483|gb|BJ176523.1|BJ176523
genomic: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAGgtactctttc ... ttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATC
EST: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAG ATATATGTGGAGATA-AAGAGAGCACGTTTAATCAAGAAGCTAGCGAAGATEST: gi|100416003|gb|BY957030.1|BY957030
genomic: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAGgtactctttc ... ttattggtagATATATGTGGAGATAGAA-AGAGCACGTTTAATCAAGAAGCTAGCGAAGAT
EST: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAG ATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATC
genomic: AAACTCGAATTGAGTTGATTCAGACTCTCAACACTGTATCTGCAGGGAAGgtactctttc ... ttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATC
gagcagtgtcttttgaacagtatccatattgattcatcgttggttttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCCGTGAAGAACAAGGGCAAATTGCTGAAGCCGCAGAATGCATGCAAGAAG
tattgat putative branch site (score: 3)
ttttatt putative PPT
atattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctttcgttgtctgattgctcacatactcttgatgatatcatgttgagcagtgtcttttgaacagtatccatattgattcatcgttggttttattggtagATATATGTGGAGATAGAAAGAGCACGTTTAATCAAGAAGCTAGCGAAGATCCGTGAAGAACAAGGGCAAATTGCTGAAGCCGCAGAATGCATGCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG