1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatcctcccttgagagcttggcagcactctctaacaaattgagatatggttccaattcatcaaaagtatagctgtttgtttctacactgactgaacgaactcactgcggctgctcctgtcggttgtctcgcagGCCCGGATCTGGTCAACTTTGTAAAGCGGAATTTGCCGCCATTGGTGACACCCTTAAACATCGATAGCTTGAAGTTCCTGACGGAAGATGGTCGGCCGAT
species | Physcomitrella patens |
transcript | PP1S55_265V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTACGTGGAGAAGATGAAGTGCAAGATGTGTACTATGGACCTTTTGAAG GCCCGGATCTGGTCAACTTTGTAAAGCGGAATTTGCCGCCATTGGTGACACEST: gi|162238480|gb|FC417387.1|FC417387
genomic: GTTACGTGGAGAAGATGAAGTGCAAGATGTGTACTATGGACCTTTTGAAGgtatcctccc ... tgtctcgcagGCCCGGATCTGGTCAACTTTGTAAAGCGGAATTTGCCGCCATTGGTGACAC
EST: GTTACGTGGAGAAGATGAAGTGCAAGATGTGTACTATGGACCTTTTGAAG GCCCGGATCTGGTCAACTTTGTAAAGCGGAATTTGCCGCCATTGGTGACACEST: gi|162277436|gb|FC452963.1|FC452963
genomic: GTTACGTGGAGAAGATGAAGTGCAAGATGTGTACTATGGACCTTTTGAAGgtatcctccc ... tgtctcgcagGCCCGGATCTGGTCAACTTTGTAAAGCGGAATTTGCCGCCATTGGTGACAC
EST: GTTACGTGGAGAAGATGAAGTGCAAGATGTGTACTATGGACCTTTTGAAG GCCCGGATCTGGTCAACTTTGTAAAGCGGAATTTGCCGCCATTGGTGACACEST: gi|162277435|gb|FC452962.1|FC452962
genomic: GTTACGTGGAGAAGATGAAGTGCAAGATGTGTACTATGGACCTTTTGAAGgtatcctccc ... tgtctcgcagGCCCGGATCTGGTCAACTTTGTAAAGCGGAATTTGCCGCCATTGGTGACAC
EST: GTTACGTGGAGAAGATGAAGTGCAAGATGTGTACTATGGACCTTTTGAAG GCCCGGATCTGGTCAACTTTGTAAAGCGGAATTTGCCGCCATTGGTGACAC
genomic: GTTACGTGGAGAAGATGAAGTGCAAGATGTGTACTATGGACCTTTTGAAGgtatcctccc ... tgtctcgcagGCCCGGATCTGGTCAACTTTGTAAAGCGGAATTTGCCGCCATTGGTGACAC
tttctacactgactgaacgaactcactgcggctgctcctgtcggttgtctcgcagGCCCGGATCTGGTCAACTTTGTAAAGCGGAATTTGCCGCCATTGGTGACACCCTTAAACATCGATAGCTTGAAGTTCCTGACGGAAGATGGTCGGCCGAT
aactcac putative branch site (score: 6)
ttgtctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctcccttgagagcttggcagcactctctaacaaattgagatatggttccaattcatcaaaagtatagctgtttgtttctacactgactgaacgaactcactgcggctgctcctgtcggttgtctcgcagGCCCGGATCTGGTCAACTTTGTAAAGCGGAATTTGCCGCCATTGGTGACACCCTTAAACATCGATAGCTTGAAGTTCCTGACGGAAGATGGTCGGCCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG