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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcatccatcactgagaagcttctcaacgcattaccactcgccgtgcttctgccacaggtgaataccttctggtaatttatgaatatttctgaatccagctatttttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGCTAACACAGAGCGTTACAGCGACGTGATCGTGGGTCTGAATGACACCAAG

Basic information

species Physcomitrella patens
transcript PP1S55_204V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 4
gtactcatccatcactgagaagcttctcaacgcattaccactcgccgtgcttctgccacaggtgaataccttctggtaatttatgaatatttctgaatccagctatttttggttg--cagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGCTAACACAGAGCGTTACAGCGACGTGATCGTGGGTCTGAATGACACCAAG
                               | | |   | ||  |    ||||   |||  ||||| | |     |    |  |  | | |     ||    | | | ||  ||   ||| | || |||| |  ||||||||| || ||||| ||||| |||||||| || ||||||||||| |||||  |  |||| ||||| |||||||||||||  
-------------------------------gtagtcgtaatcttca-atttcttaaaca--tgaat-cttaaaaatggaatgggcttttcttcttttctgattttgtatgtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ37320 (Selaginella moellendorffii), 3'ss of exon 4
gtactcatccatcactgagaagcttctcaacgcattaccactcgccgtgcttctgccacaggtgaataccttctggtaatttatgaatatttctgaatccagctatttttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGCTAACACAGAGCGTTACAGCGACGTGATCGTGGGTCTGAATGACACCAAG
                                              || ||||  | |     || |   ||||     | | |   |  |  ||  | | ||| |  |   ||||||  |||||||| | |||||||| || ||||| || |||||  ||||||| || ||||| || || |||||||| ||||| ||||| ||||||||||| |||
----------------------------------------------gtacttcgtcgaatctcgattgagttcttcctctctttcttttctcatgttttc-gctttcatcccttgcagACACTTCAAGTCACAAACCAAAGTGGACAAAGTCGTGGTTTTGTGGACTGCAAACACGGAACGCTACAGCGATGTGATTGTGGGCCTGAATGACACGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162277484|gb|FC453427.1|FC453427
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGA
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGA
EST: gi|162185828|gb|FC362384.1|FC362384
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162162654|gb|FC338956.1|FC338956
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|40781590|gb|AJ583520.1|AJ583520
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162247857|gb|FC420616.1|FC420616
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162249068|gb|FC421190.1|FC421190
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCANACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162155272|gb|FC331729.1|FC331729
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162191433|gb|FC368190.1|FC368190
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162186353|gb|FC361661.1|FC361661
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162194084|gb|FC370259.1|FC370259
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162184403|gb|FC359149.1|FC359149
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162175808|gb|FC352110.1|FC352110
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162184271|gb|FC359693.1|FC359693
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162220955|gb|FC396140.1|FC396140
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162151547|gb|FC327260.1|FC327260
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162268155|gb|FC443833.1|FC443833
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|100432324|gb|BY960427.1|BY960427
EST:     TNCA-GGGTTC-AAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAG-CGCAAACCA-GGTTGACAAG
genomic: T-CAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAG
EST: gi|162156175|gb|FC332550.1|FC332550
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162172410|gb|FC349079.1|FC349079
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162167690|gb|FC344004.1|FC344004
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162173468|gb|FC349847.1|FC349847
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162197484|gb|FC372862.1|FC372862
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162256553|gb|FC432863.1|FC432863
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCANACCAAGGTTGACAAGGTAGTGGTACTGTGGAC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGAC
EST: gi|162206576|gb|FC382945.1|FC382945
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCANACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162194175|gb|FC369687.1|FC369687
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162246259|gb|FC421966.1|FC421966
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162222899|gb|FC399361.1|FC399361
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
EST: gi|162218352|gb|FC394526.1|FC394526
EST:     ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACG                         GAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC
genomic: ATCAAGGGTTCCAAGAAGGAGCAAATGGAGCGGATTATCCAGGACATACGgtactcatcc ... ttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaataccttctggtaatttatgaatatttctgaatccagctatttttggttgcagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGCTAACACAGAGCGTTACAGCGACGTGATCGTGGGTCTGAATGACACCAAG
                                       ctattttt  CT-rich tract
             taatttatgaatattt  TA-rich tract