Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcagctcccataagatttccaagtgggtcggccaatttaacacttatcctgaatctggtatgatagtttgccactaagactgcgaaaatttgttttcagATTCCACATTGCAGAGGCGAGTTTGAGACTTGCCGCAGAACCTGTTCAATGA

Basic information

species Physcomitrella patens
transcript PP1S559_7V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67576801|gb|BJ949625.1|BJ949625
EST:     GATATCTGGGCATGGTCGTATTTGCACCTGGAGTACAG                         ATTCCACATTGCAGAGGCGAGTTT
genomic: GATATCTGGGCATGGTCGTATTTGCACCTGGAGTACAGgtacattaca ... ttgttttcagATTCCACATTGCAGAGGCGAGTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcctgaatctggtatgatagtttgccactaagactgcgaaaatttgttttcagATTCCACATTGCAGAGGCGAGTTTGAGACTTGCCGCAGAACCTGTTCAATGA
                                            tttgttttc  CT-rich tract
                                        aaaatttgttttca  TA-rich tract