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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttttggtgtattcaaaattaatttgaaacaaaaaataaactttaatgtttctaaagataaagctataatttcaaaatatctgcgttcttgttatacagGTTGTCGAAGCTCCCTTGCCCAAAGCTCCGTTAGATGCCTCTGTTGTTGCTCATTGGCTTGCGGTCGAGGGAGTCCAGCCAGCTATACCAGAGAATGCAC

Basic information

species Physcomitrella patens
transcript PP1S54_134V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67573495|gb|BJ946319.1|BJ946319
EST:     GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAG                         GTTGTCGAAGCTCCCTTGCCCAAAGCTCCGTTAGATGCCTCTGTTGTTGCT
genomic: GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAGgtaaattagt ... tgttatacagGTTGTCGAAGCTCCCTTGCCCAAAGCTCCGTTAGATGCCTCTGTTGTTGCT
EST: gi|100367363|gb|BY966945.1|BY966945
EST:     GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAG                         GTTGTCGAAGCTCCCTTTGCC-AAANNGCTC-GT-AGATGCCTCTGTTGTT
genomic: GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAGgtaaattagt ... tgttatacagGTTGTCGAAGCTCCCTT-GCCCAAA--GCTCCGTTAGATGCCTCTGTTGTT
EST: gi|67508060|gb|BJ940932.1|BJ940932
EST:     GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAG                         GTTGTCGAAGCTCCCTTGCCCAAAGCTCCGTTAGATGCCTCTGTTGTTGCT
genomic: GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAGgtaaattagt ... tgttatacagGTTGTCGAAGCTCCCTTGCCCAAAGCTCCGTTAGATGCCTCTGTTGTTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtttctaaagataaagctataatttcaaaatatctgcgttcttgttatacagGTTGTCGAAGCTCCCTTGCCCAAAGCTCCGTTAGATGCCTCTGTTGTTGCTCATTGGCTTGCGGTCGAGGGAGTCCAGCCAGCTATACCAGAGAATGCAC
     ttctaaa  putative branch site (score: 2)
                                         ttcttgtt  putative PPT
        taaagataaagctata  TA-rich tract