1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaacaatatctgcttggcaatgtaccacataccatccttcagaaagtgccactgattcaagtcgtctcaaatacagcttctcctattgtgccacttttgctctctgagcgaagcattaaccatcaggctcaggagtgtttagaaggtatctgattctttcaatctttacagGCTGAGAAGAAAATGCTGGAAGGTGGCGACAACAAAGAG
species | Physcomitrella patens |
transcript | PP1S540_7V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTACCGAACTGAGGATCTCCAGCCCTATGTATTGGAGGTCGTTAAGAAG GCTGAGAAGAAAATGCTGGAAGGTGGCGACAACAAAGAGEST: gi|100361559|gb|BY984067.1|BY984067
genomic: CTTACCGAACTGAGGATCTCCAGCCCTATGTATTGGAGGTCGTTAAGAAGgtaaacaata ... atctttacagGCTGAGAAGAAAATGCTGGAAGGTGGCGACAACAAAGAG
EST: CTTACCGAACTGAGGATCTCCAGCCCTATGTATTGGAGGTCGTTAAGAAG GCTGAGAAGAAAATGCTGGAAGGTGGCGACAACAAAGAGEST: gi|162172938|gb|FC348943.1|FC348943
genomic: CTTACCGAACTGAGGATCTCCAGCCCTATGTATTGGAGGTCGTTAAGAAGgtaaacaata ... atctttacagGCTGAGAAGAAAATGCTGGAAGGTGGCGACAACAAAGAG
EST: CTTACCGAACTGAGGATCTCCAGCCCTATGTATTGGAGGTCGTTAAGAAG GCTGAGAAGAAAATGCTGGAAGGTGGCGACAACAAAGAG
genomic: CTTACCGAACTGAGGATCTCCAGCCCTATGTATTGGAGGTCGTTAAGAAGgtaaacaata ... atctttacagGCTGAGAAGAAAATGCTGGAAGGTGGCGACAACAAAGAG
taaccatcaggctcaggagtgtttagaaggtatctgattctttcaatctttacagGCTGAGAAGAAAATGCTGGAAGGTGGCGACAACAAAGAG
ttctttcaatcttt CT-rich tract
aatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacaatatctgcttggcaatgtaccacataccatccttcagaaagtgccactgattcaagtcgtctcaaatacagcttctcctattgtgccacttttgctctctgagcgaagcattaaccatcaggctcaggagtgtttagaaggtatctgattctttcaatctttacagGCTGAGAAGAAAATGCTGGAAGGTGGCGACAACAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG