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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcttattgaaattgaagcactggttattattcttgagcgtggagagggtgaacttgcttctgttttgaaaagaggataactgatggttctgtggagcagATTAGGTTGGCTCATACGGTTCATCAGTCACTCGATTATTTCAGGGTTCACGACAGGGGCGGCGATTATCATTGGATTTTCACAAATCAAGGATTTTCTA

Basic information

species Physcomitrella patens
transcript PP1S53_215V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162174226|gb|FC350609.1|FC350609
EST:     CTGCTTGCACTTATGGTTGGACTGTTGGAGTGCGCCATGGGCTTAGCCAG                         ATTAGGTTGGCTCATACGGTTCATCAGTCACTCGATTATTTCAGGGTTCAC
genomic: CTGCTTGCACTTATGGTTGGACTGTTGGAGTGCGCCATGGGCTTAGCCAGgtacttcgtt ... tgtggagcagATTAGGTTGGCTCATACGGTTCATCAGTCACTCGATTATTTCAGGGTTCAC
EST: gi|162191853|gb|FC368002.1|FC368002
EST:     CTGCTTGCACTTATGGTTGGACTGTTGGAGTGCGCCATGGGCTTAGCCAG                         ATTAGGTTGGCTCATACGGTTCATCAGTCACTCGATTATTTCAGGGTTCAC
genomic: CTGCTTGCACTTATGGTTGGACTGTTGGAGTGCGCCATGGGCTTAGCCAGgtacttcgtt ... tgtggagcagATTAGGTTGGCTCATACGGTTCATCAGTCACTCGATTATTTCAGGGTTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggtgaacttgcttctgttttgaaaagaggataactgatggttctgtggagcagATTAGGTTGGCTCATACGGTTCATCAGTCACTCGATTATTTCAGGGTTCACGACAGGGGCGGCGATTATCATTGGATTTTCACAAATCAAGGATTTTCTA
                                 aactgat  putative branch site (score: 3)
                  ttttgaaaa  TA-rich tract