1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcgtgatttggttaggtctaggtgataatatcgagttttttctggtcaagaaatgcaatcaaagatgcgctagtcacaattgcgtgctttttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAGCAGGCATCAGCACCCAGGAG
species | Physcomitrella patens |
transcript | PP1S51_241V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAG ATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATEST: gi|162269245|gb|FC445802.1|FC445802
genomic: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAGgtgagacata ... ttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTAT
EST: CAACTCTGAACGGTTCTGAACCAGAG ATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAGEST: gi|162232388|gb|FC408822.1|FC408822
genomic: CAACTCTG-ACGGTTCTGAACCAGAGgtgagacata ... ttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAG
EST: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAG ATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAGEST: gi|162186405|gb|FC362961.1|FC362961
genomic: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAGgtgagacata ... ttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAG
EST: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAG ATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAGEST: gi|22492339|gb|BU052262.1|BU052262
genomic: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAGgtgagacata ... ttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAG
EST: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAG ATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAGEST: gi|162243414|gb|FC425110.1|FC425110
genomic: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAGgtgagacata ... ttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAG
EST: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAG ATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAGEST: gi|162233273|gb|FC409615.1|FC409615
genomic: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAGgtgagacata ... ttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAG
EST: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAG ATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTEST: gi|67726581|gb|BJ976840.1|BJ976840
genomic: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAGgtgagacata ... ttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCT
EST: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAG ATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAGEST: gi|22133223|gb|BQ827614.1|BQ827614
genomic: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAGgtgagacata ... ttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAG
EST: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAG ATGTGTGGCAATGGAATTCGCTGTTTCGTCAAGTATCTTGCTGACCTTGAGEST: gi|162252752|gb|FC428789.1|FC428789
genomic: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAGgtgagacata ... ttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAG
EST: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAG ATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAG
genomic: GGGAAGATTATCAAATGCGAATCTACAACTCTGACGGTTCTGAACCAGAGgtgagacata ... ttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAG
tcaagaaatgcaatcaaagatgcgctagtcacaattgcgtgctttttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAGCAGGCATCAGCACCCAGGAG
tgcttttt CT-rich tract
aatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgtgatttggttaggtctaggtgataatatcgagttttttctggtcaagaaatgcaatcaaagatgcgctagtcacaattgcgtgctttttgcaagcagATGTGTGGCAATGGAATTCGCTGTTTCGCCAAGTATCTTGCTGACCTTGAGCAGGCATCAGCACCCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG