1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcaagtcaagctttgcaaatagttgaagttctgggaattacaatgaggcctgctttgaagataacattacttcttctgacattgtggatcatgcgtacagGGTCCAAGTAGCTGTTCTTATTGTGTAGGAAAAGGAATGGTGTTGGAGGATTCAGTATGGGAGTCAGCTTGGGAAACAGCTCAAACTCG
species | Physcomitrella patens |
transcript | PP1S4_356V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCCTTGTCCAGTGTGCCGGGGGAGGGGTTACATTCTGGACAGTCCCAAG GGTCCAAGTAGCTGTTCTTATTGTGTAGGAAAAGGAATGGTGT-GGNAG-AEST: gi|100385343|gb|BY950935.1|BY950935
genomic: TGCCTTGTCCAGTGTGCCGGGGGAGGGGTTACATTCTGGACAGTCCCAAGgtttttattt ... atgcgtacagGGTCCAAGTAGCTGTTCTTATTGTGTAGGAAAAGGAATGGTGTTGG-AGGA
EST: TGCCTTGTCCAGTGTGCCGGGGGAGGGGTTACATTCTGGACAGTCCCAAG GGTCCAAGTAGCTGTTCTTATTGTGTAGGAAAAGGAATGGTGTTGGAGGATEST: gi|100371423|gb|BY967973.1|BY967973
genomic: TGCCTTGTCCAGTGTGCCGGGGGAGGGGTTACATTCTGGACAGTCCCAAGgtttttattt ... atgcgtacagGGTCCAAGTAGCTGTTCTTATTGTGTAGGAAAAGGAATGGTGTTGGAGGAT
EST: TGCCTTGTCCAGTGTGCCCGGGGAGGGGTTACATTCTGGACAGTCCCAAG GGTCAAAGTAGCTGTTCTTATTGTGTAGGAAAAAGGA-TGGTGTTGGAGGAEST: gi|162168844|gb|FC345042.1|FC345042
genomic: TGCCTTGTCCAGTGTGCCGGGGGAGGGGTTACATTCTGGACAGTCCCAAGgtttttattt ... atgcgtacagGGTCCAAGTAGCTGTTCTTATTGTGTAGGAAAA-GGAATGGTGTTGGAGGA
EST: TGCCTTGTCCAGTGTGCCGGGGGAGGGGTTACATTCTGGACAGTCCCAAG GGTCCAAGTAGCTGTTCTTATTGTGTAGGAAAAGGAATGGTGTTGGAGGAT
genomic: TGCCTTGTCCAGTGTGCCGGGGGAGGGGTTACATTCTGGACAGTCCCAAGgtttttattt ... atgcgtacagGGTCCAAGTAGCTGTTCTTATTGTGTAGGAAAAGGAATGGTGTTGGAGGAT
aggcctgctttgaagataacattacttcttctgacattgtggatcatgcgtacagGGTCCAAGTAGCTGTTCTTATTGTGTAGGAAAAGGAATGGTGTTGGAGGATTCAGTATGGGAGTCAGCTTGGGAAACAGCTCAAACTCG
ttctgac putative branch site (score: 31)
ataacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaagtcaagctttgcaaatagttgaagttctgggaattacaatgaggcctgctttgaagataacattacttcttctgacattgtggatcatgcgtacagGGTCCAAGTAGCTGTTCTTATTGTGTAGGAAAAGGAATGGTGTTGGAGGATTCAGTATGGGAGTCAGCTTGGGAAACAGCTCAAACTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA