1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgtggcaatctcgtgaattgtgtcaaaatcctgaacggagaacaccgatgtgggtgaaatttggttttcgcgttgagattgtatcttttgtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGGAGTACGGGATGATTGACGGAGTTATTGACAAGGATGCAACTATTGCTA
species | Physcomitrella patens |
transcript | PP1S4_13V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|37821216|gb|BJ579282.1|BJ579282
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|67692351|gb|BJ952584.1|BJ952584
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|15727787|gb|BI740463.1|BI740463
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|37847070|gb|BJ605078.1|BJ605078
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|15729037|gb|BI741105.1|BI741105
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|162190053|gb|FC366627.1|FC366627
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|67573833|gb|BJ946657.1|BJ946657
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTANAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|18339814|gb|BJ171841.1|BJ171841
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|37827419|gb|BJ585431.1|BJ585431
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|7583788|gb|AW699692.1|AW699692
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|162206018|gb|FC382803.1|FC382803
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|162224723|gb|FC401971.1|FC401971
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|67697220|gb|BJ957453.1|BJ957453
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGEST: gi|208379329|gb|DC918987.1|DC918987
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
ccgatgtgggtgaaatttggttttcgcgttgagattgtatcttttgtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGGAGTACGGGATGATTGACGGAGTTATTGACAAGGATGCAACTATTGCTA
tcttttgtatctcc CT-rich tract
tgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtggcaatctcgtgaattgtgtcaaaatcctgaacggagaacaccgatgtgggtgaaatttggttttcgcgttgagattgtatcttttgtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATGGAGTACGGGATGATTGACGGAGTTATTGACAAGGATGCAACTATTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG