1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttaaagatttgttctttgtggcataatgtattacatagatccaaatgacagatggtgactctctggtaactggcgtatcgtctttcttggcagaacagTGACGAAAGCATTCGCAGTGGCCACAGGTTTAGTTTTTGGAGGCAGTATCATTGCAGCAGCTGTAACAGCTTCTAAGCATGATATTAAATCG
species | Physcomitrella patens |
transcript | PP1S49_90V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAAGCTTCCGTTATGGACGAGAAGGCAGCGATGGAAGGCTTATTCGTTG TGACGAAAGCATTCGCAGTGGCCACAGGTTTAGTTTTTGGAGGCAGTATCAEST: gi|15728655|gb|BI740901.1|BI740901
genomic: TAAAGCTTCCGTTATGGACGAGAAGGCAGCGATGGAAGGCTTATTCGTTGgtacagtgat ... ggcagaacagTGACGAAAGCATTCGCAGTGGCCACAGGTTTAGTTTTTGGAGGCAGTATCA
EST: TAAAGCTTCCGTTATGGACGAGAAGGCAGCGATGGAAGGCTTATTCGTTG TGACGAAAGCATTCGCAGTGGCCACAGGTTTAGTTTTTGGAGGCAGTATCAEST: gi|208367923|gb|DC950976.1|DC950976
genomic: TAAAGCTTCCGTTATGGACGAGAAGGCAGCGATGGAAGGCTTATTCGTTGgtacagtgat ... ggcagaacagTGACGAAAGCATTCGCAGTGGCCACAGGTTTAGTTTTTGGAGGCAGTATCA
EST: TAAAGCTTCCGTTATGGACGAGAAGGCAGCGATGGAAGGCTTATTCGTTGAACAG
genomic: TAAAGCTTCCGTTATGGACGAGAAGGCAGCGATGGAAGGCTTATTCGTT-----Ggtacagtgat ... ggcaga
aatgacagatggtgactctctggtaactggcgtatcgtctttcttggcagaacagTGACGAAAGCATTCGCAGTGGCCACAGGTTTAGTTTTTGGAGGCAGTATCATTGCAGCAGCTGTAACAGCTTCTAAGCATGATATTAAATCG
tggtaac putative branch site (score: 5)
tctttcttg putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaaagatttgttctttgtggcataatgtattacatagatccaaatgacagatggtgactctctggtaactggcgtatcgtctttcttggcagaacagTGACGAAAGCATTCGCAGTGGCCACAGGTTTAGTTTTTGGAGGCAGTATCATTGCAGCAGCTGTAACAGCTTCTAAGCATGATATTAAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG