1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcagcatctctgctaccagttgtatccatgttgtgttagttcttatgctcatagttctctattgttttctttagtagcatttactctgcaatgcagttataaaactttccgactgcgttgggagtgggatcaataacacgaatattatcatgattgttgcgtgctcagGTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGTCACCATCGAACAG
species | Physcomitrella patens |
transcript | PP1S49_275V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCAAGCTAACTCCTCGATGTCTGAGGCGGAAGTGCTGTCTGCATTGCAG GTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGTEST: gi|162157107|gb|FC333677.1|FC333677
genomic: GTCAAGCTAACTCCTCGATGTCTGAGGCGGAAGTGCTGTCTGCATTGCAGgtcagcatct ... gcgtgctcagGTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGT
EST: GTCAAGCTAACTCCTCGATGTCTGAGGCGGAAGTGCTGTCTGCATTGCAG GTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGTEST: gi|67574949|gb|BJ947773.1|BJ947773
genomic: GTCAAGCTAACTCCTCGATGTCTGAGGCGGAAGTGCTGTCTGCATTGCAGgtcagcatct ... gcgtgctcagGTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGT
EST: GTCAAGCTAACTCCTCGATGTCTGAGGCGGAAGTGCTGTCTGCATTGCAG GTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGTEST: gi|67693267|gb|BJ953500.1|BJ953500
genomic: GTCAAGCTAACTCCTCGATGTCTGAGGCGGAAGTGCTGTCTGCATTGCAGgtcagcatct ... gcgtgctcagGTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGT
EST: GTCAAGCTAACTCCTCGATGTCTGAGGCGGAAGTGCTGTCTGCATTGCAG GTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGTEST: gi|67698376|gb|BJ958609.1|BJ958609
genomic: GTCAAGCTAACTCCTCGATGTCTGAGGCGGAAGTGCTGTCTGCATTGCAGgtcagcatct ... gcgtgctcagGTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGT
EST: GTCAAGCTAACTCCTCGATGTCTGAGGCGGAAGTGCTGTCTGCATTGCAG GTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGT
genomic: GTCAAGCTAACTCCTCGATGTCTGAGGCGGAAGTGCTGTCTGCATTGCAGgtcagcatct ... gcgtgctcagGTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGT
tgcgttgggagtgggatcaataacacgaatattatcatgattgttgcgtgctcagGTGATTTTGTCGTCGCAATACTATCCTCTTCATGTAATGTGCAATTTTGGTCACCATCGAACAG
caataac putative branch site (score: 22)
aatattatcatgatt TA-rich tract