1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttgaatttcaatttcttcaggagttgcacttcactatatcatttcaattgtgcataccaagtaggagctgttacaattggacaccatttttttttccaattctctgtctactgttccgttgctgtagGGCCGGGAGACCTGGAGCTCTCTCCAACTTCTGAGGCAAGACCCCCGACGGAGTCACTGCTTGTGAGCGATGGGATATCTAGATCAAGAAAGAGCATTCA
species | Physcomitrella patens |
transcript | PP1S49_140V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAGATGTATCGGACTGTGAAGACAACAGATAAATCAGGCTCCTCTCCAG GGCCGGGAGACCTGGAGCTCTCTCCAACTTCTGAGGCAAGACCCCCGACGGEST: gi|37831729|gb|BJ589741.1|BJ589741
genomic: GCAGATGTATCGGACTGTGAAGACAACAGATAAATCAGGCTCCTCTCCAGgttgaatttc ... gttgctgtagGGCCGGGAGACCTGGAGCTCTCTCCAACTTCTGAGGCAAGACCCCCGACGG
EST: ACAGATAAATCAGGCTCCTCTCCAG GGCCGGGAGACCTGGAGCTCTCTCCAACTTCTGAGGCAAGACCCCCGACGGEST: gi|37821155|gb|BJ579221.1|BJ579221
genomic: ACAGATAAATCAGGCTCCTCTCCAGgttgaatttc ... gttgctgtagGGCCGGGAGACCTGGAGCTCTCTCCAACTTCTGAGGCAAGACCCCCGACGG
EST: TGAAGACAACAGATAAATCAGGCTCCTCTCCAG GGCCGGGAGACCTGGAGCTCTCTCCAACTTCTGAGGCAAGACCCCCGACGG
genomic: TGAAGACAACAGATAAATCAGGCTCCTCTCCAGgttgaatttc ... gttgctgtagGGCCGGGAGACCTGGAGCTCTCTCCAACTTCTGAGGCAAGACCCCCGACGG
acaattggacaccatttttttttccaattctctgtctactgttccgttgctgtagGGCCGGGAGACCTGGAGCTCTCTCCAACTTCTGAGGCAAGACCCCCGACGGAGTCACTGCTTGTGAGCGATGGGATATCTAGATCAAGAAAGAGCATTCA
ttccgtt CT-rich tract
atttttttttccaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaatttcaatttcttcaggagttgcacttcactatatcatttcaattgtgcataccaagtaggagctgttacaattggacaccatttttttttccaattctctgtctactgttccgttgctgtagGGCCGGGAGACCTGGAGCTCTCTCCAACTTCTGAGGCAAGACCCCCGACGGAGTCACTGCTTGTGAGCGATGGGATATCTAGATCAAGAAAGAGCATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA