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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctctgatttcataactaagatgcctttttgtcaaaattatactgtgttagagtgagtaagctgttgcctaaaagtgtgtactgtattatcgttgtttcagGAAGTACGGACTGCGTTGCCTATCTGGACGCTACCGGACACCAACGGGCTGACGCTTGACGAATCGCACTATGGCCAGTCTG

Basic information

species Physcomitrella patens
transcript PP1S49_136V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162153001|gb|FC330031.1|FC330031
EST:     CTCCAGAAAATGGACATCGTCCCTCTTCGTCTGCAAATTTTGAACGTCTG                         GAAGTACGGACTGCGTTGCCTATCTGGACGCTACCGGACACCAACGGGCTG
genomic: CTCCAGAAAATGGACATCGTCCCTCTTCGTCTGCAAATTTTGAACGTCTGgtaaatggct ... gttgtttcagGAAGTACGGACTGCGTTGCCTATCTGGACGCTACCGGACACCAACGGGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagagtgagtaagctgttgcctaaaagtgtgtactgtattatcgttgtttcagGAAGTACGGACTGCGTTGCCTATCTGGACGCTACCGGACACCAACGGGCTGACGCTTGACGAATCGCACTATGGCCAGTCTG
                    gcctaaa  putative branch site (score: 3)
                                              ttgtttc  putative PPT
                                    tgtattat  TA-rich tract