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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaaatttcaatatttttttttattattttattttattattaatgaatatgtttttgttcctccctaattggtggattttttaatgcattggggaaatagGGAACATTGGAAATATTCCGCTTGTAATCATAGGTGCCATTTGTCGAGAAAAGGGCAACCCATTTGAGCATCCTGAAACGTGCAACGCAAATGGCGTGGC

Basic information

species Physcomitrella patens
transcript PP1S497_6V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100395044|gb|BY953578.1|BY953578
EST:     AAGCCACCCTCCCGAGTTTTTCA-CTTTACTGTCGTCATGATAGGAATCG                         GGGACAATGGAAATATTCCGCTTGTAATCATAGGTGCCATTTGTCGAGAAA
genomic: AAGCCACC-TCCCGAGTTTTTCAACTTTACTGTCGTCATGATAGGAATCGgtacttcctc ... ggggaaatagGGAACATTGGAAATATTCCGCTTGTAATCATAGGTGCCATTTGTCGAGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatgtttttgttcctccctaattggtggattttttaatgcattggggaaatagGGAACATTGGAAATATTCCGCTTGTAATCATAGGTGCCATTTGTCGAGAAAAGGGCAACCCATTTGAGCATCCTGAAACGTGCAACGCAAATGGCGTGGC
                                 ttttaat  putative branch site (score: 3)
                              attttttaatgcatt  TA-rich tract