1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgggttttttttcaataagctgttacgagatgattttagctacttgactgttggttctgagttgaactctttcggttaccgttgtcaaataaaaattgatgtgtattgtaatatttcatcttaagcagaaactcgaagataacgttttctttagtaattcacagtggcgagtcttacatggttttcctgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAGTAATTGGTCCCAATGGGTGCGGCAAGAGCACGCTATTGCGGATGTTGA
species | Physcomitrella patens |
transcript | PP1S495_14V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAEST: gi|162269948|gb|FC445946.1|FC445946
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAEST: gi|162173200|gb|FC349254.1|FC349254
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAEST: gi|18368890|gb|BJ200975.1|BJ200975
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAEST: gi|162172747|gb|FC348336.1|FC348336
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAEST: gi|162166022|gb|FC340418.1|FC340418
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAEST: gi|162197641|gb|FC374475.1|FC374475
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAEST: gi|162174172|gb|FC350375.1|FC350375
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAEST: gi|162152733|gb|FC329739.1|FC329739
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAEST: gi|162194863|gb|FC370527.1|FC370527
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAEST: gi|162163639|gb|FC340264.1|FC340264
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAEST: gi|162246027|gb|FC421890.1|FC421890
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
EST: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAG GTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
genomic: GCAGAACTGTTGTCCAGATCAAGAATTTGGGATTTCGTTATGACGACAAGgtgggttttt ... tgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCA
cgttttctttagtaattcacagtggcgagtcttacatggttttcctgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAGTAATTGGTCCCAATGGGTGCGGCAAGAGCACGCTATTGCGGATGTTGA
gtcttac putative branch site (score: 52)
ttttcctgttttgc putative PPT
tttagtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttttttttcaataagctgttacgagatgattttagctacttgactgttggttctgagttgaactctttcggttaccgttgtcaaataaaaattgatgtgtattgtaatatttcatcttaagcagaaactcgaagataacgttttctttagtaattcacagtggcgagtcttacatggttttcctgttttgcagGTCCTGTTTGATAACGCACAGCTCACTGTGGAGCGAGGCGAGAAACTGGCAGTAATTGGTCCCAATGGGTGCGGCAAGAGCACGCTATTGCGGATGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA