1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggctgtcactaagtgaatggattttcgattctgggtttaagtaaatgtgatctaaacaagagccacaattaattgttggtttgtatgtgggtactgtcagGCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTCATAGTTTCTGTGTAAATCTGCTGAAGAGATGCTGTAGACAACCCATTTG
species | Physcomitrella patens |
transcript | PP1S491_11V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGT GCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTCEST: gi|37838829|gb|BJ596837.1|BJ596837
genomic: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGTgtaagtggtt ... gtactgtcagGCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTC
EST: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGT GCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTCEST: gi|208376115|gb|DC906774.1|DC906774
genomic: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGTgtaagtggtt ... gtactgtcagGCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTC
EST: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGT GCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTCEST: gi|7147932|gb|AW509854.1|AW509854
genomic: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGTgtaagtggtt ... gtactgtcagGCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTC
EST: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGT GCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTCEST: gi|18360940|gb|BJ193004.1|BJ193004
genomic: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGTgtaagtggtt ... gtactgtcagGCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTC
EST: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGT GCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTCEST: gi|162229029|gb|FC405064.1|FC405064
genomic: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGTgtaagtggtt ... gtactgtcagGCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTC
EST: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGT GCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTC
genomic: AGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGTgtaagtggtt ... gtactgtcagGCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTC
tgtgatctaaacaagagccacaattaattgttggtttgtatgtgggtactgtcagGCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTCATAGTTTCTGTGTAAATCTGCTGAAGAGATGCTGTAGACAACCCATTTG
aattaat putative branch site (score: 2)
aattaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctgtcactaagtgaatggattttcgattctgggtttaagtaaatgtgatctaaacaagagccacaattaattgttggtttgtatgtgggtactgtcagGCCGCACCAAAGCTCTTCCGCAAGATAGTATGAGAATGGCTCATTAGTGTCATAGTTTCTGTGTAAATCTGCTGAAGAGATGCTGTAGACAACCCATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG