1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccccatgtatctcagaattgtctgaaaactggaatgcacaaatttgttgtgttgagtcacgttacattgttgatcaatttttcttaaacataaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTGCTCCGGCTATTAGTTCAGAACAGAATCGCGGAGTTTCATACAG
species | Physcomitrella patens |
transcript | PP1S48_71V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCATTCNAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCEST: gi|37838835|gb|BJ596843.1|BJ596843
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATC
EST: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTEST: gi|37834588|gb|BJ592600.1|BJ592600
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTEST: gi|18363518|gb|BJ195590.1|BJ195590
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCEST: gi|18350863|gb|BJ182914.1|BJ182914
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTC
EST: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTEST: gi|162221494|gb|FC397303.1|FC397303
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTEST: gi|37840652|gb|BJ598660.1|BJ598660
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: CATTCGAGCGTCATTTTCTTCAACTGAAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTEST: gi|18346080|gb|BJ178123.1|BJ178123
genomic: CATTCGAGCGTCATTTTCTTCAACTG-AAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTEST: gi|18353130|gb|BJ185185.1|BJ185185
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCANAACAAGAGTATCCTATTTTACGTCTTAACTTEST: gi|208360510|gb|DC930265.1|DC930265
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTEST: gi|208375002|gb|DC944797.1|DC944797
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTEST: gi|37825192|gb|BJ583258.1|BJ583258
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTEST: gi|37830197|gb|BJ588209.1|BJ588209
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
EST: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAG GGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
genomic: GCATTCGAGCGTCATTTTCTTCAACTGAAGTCGTATTACACCGATACTAGgtatgggtta ... taaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTT
gttgtgttgagtcacgttacattgttgatcaatttttcttaaacataaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTGCTCCGGCTATTAGTTCAGAACAGAATCGCGGAGTTTCATACAG
tgttgat putative branch site (score: 4)
atcaatttttcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccatgtatctcagaattgtctgaaaactggaatgcacaaatttgttgtgttgagtcacgttacattgttgatcaatttttcttaaacataaactgcagGGGTTTGATTCCTCCATCAGAACAAGAGTATCCTATTTTAGGTCTTAACTTGCTCCGGCTATTAGTTCAGAACAGAATCGCGGAGTTTCATACAG
- - - - - - - - - - - - - - - - -atgcaca