1 5' 3' | 2 5' 3' | 3 5' 3' |
...taagagcaacagagatgaaccatgattgttcgagggtcctgtgatgccattcccggaggatctgaccatctgcatctctgaccatgttgcttgcttgcagTGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCGAGATCGGAACCCACCTGGGGTGTGACTGCGAGTACATCAAGGCTTGCTT
species | Physcomitrella patens |
transcript | PP1S48_57V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGCCGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGT TGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAEST: gi|37850989|gb|BJ608997.1|BJ608997
genomic: TCGCCGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGTgtaagtccac ... ttgcttgcagTGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCA
EST: CGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGT TGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCGEST: gi|37846958|gb|BJ604966.1|BJ604966
genomic: CGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGTgtaagtccac ... ttgcttgcagTGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCG
EST: CGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGT TGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCG
genomic: CGTCTACTCGCACCTCCCAGCGTACACCGAACTGATATACAACTGTgtaagtccac ... ttgcttgcagTGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCG
gccattcccggaggatctgaccatctgcatctctgaccatgttgcttgcttgcagTGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCGAGATCGGAACCCACCTGGGGTGTGACTGCGAGTACATCAAGGCTTGCTT
ctctgac putative branch site (score: 24)
cttgctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagagcaacagagatgaaccatgattgttcgagggtcctgtgatgccattcccggaggatctgaccatctgcatctctgaccatgttgcttgcttgcagTGTGCCAAGCACCCGGCAAAGAATGCCTCCCTGGTGAGCAGGTTCGATGCGAGATCGGAACCCACCTGGGGTGTGACTGCGAGTACATCAAGGCTTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC