1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcataacccaactaccgcctatttcctttcgtttctcttttctcttttccccttttttctttcttggcctgcttgcaatttctctcttgctgtgcccaatttaacctttaagagtgttattcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG
species | Physcomitrella patens |
transcript | PP1S48_255V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTNATATGGAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTEST: gi|162177529|gb|FC353790.1|FC353790
genomic: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
EST: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTTATATGGAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTEST: gi|162184972|gb|FC362418.1|FC362418
genomic: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
EST: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTTATATGGAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTEST: gi|37830518|gb|BJ588530.1|BJ588530
genomic: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
EST: GTCTCAGGATTCCACAACTGGATTCCAG TTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTEST: gi|162149817|gb|FC325932.1|FC325932
genomic: GTCTCAGGATTCCACAACTGGATT-CAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTT
EST: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTTATATGGAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTEST: gi|162184334|gb|FC360536.1|FC360536
genomic: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
EST: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTTATATGGAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTEST: gi|162164265|gb|FC342080.1|FC342080
genomic: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
EST: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTTATATGGAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTEST: gi|208369090|gb|DC955803.1|DC955803
genomic: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
EST: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTEST: gi|37839957|gb|BJ597965.1|BJ597965
genomic: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
EST: AGAAGTCAAACGCCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTEST: gi|162186348|gb|FC361656.1|FC361656
genomic: AGAAGTCAAACG-CCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
EST: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTTATATGGAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTEST: gi|162278776|gb|FC454619.1|FC454619
genomic: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
EST: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTEST: gi|162184971|gb|FC362417.1|FC362417
genomic: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
EST: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTTATATGGAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTEST: gi|18341097|gb|BJ173130.1|BJ173130
genomic: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
EST: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAG TTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
genomic: GAGAAGTCAAACGCCGAGGAGAAGTCTCAGGATTCCACAACTGGATTCAGgtgcataacc ... ttcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTT
gcaatttctctcttgctgtgcccaatttaacctttaagagtgttattcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG
atttaac putative branch site (score: 4)
ttattctt putative PPT
aatttaacctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcataacccaactaccgcctatttcctttcgtttctcttttctcttttccccttttttctttcttggcctgcttgcaatttctctcttgctgtgcccaatttaacctttaagagtgttattcttgtcagTTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT