1 5' 3' | 2 5' 3' | 3 5' 3' |
gtccgatctcagattcagtgcaaatctcgaatttgtagtatgctttagccatgccgtatctttgatggggaagatttgtcaccttggagataaagaattgcgtttgtggcactgttccgagaactaagtcgaatttcgtgttcaacagACGTTGGAGCAGATTGGAAACATGAGCGATCCGAGGTTCATGGCGCAGCCGGGTGGTCCGATGATGATGCCGCAAATGGGAGCCATGAATGCTGTGAGCC
species | Physcomitrella patens |
transcript | PP1S48_203V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGACGAAGCCATCCATTATGTCAAATTCCTGCAGCAACAACTTCAG ACGTTGGAGCAGATTGGAAACATGAGCGATCCGAGGTTCATGGCGCAGCCGEST: gi|162180746|gb|FC357831.1|FC357831
genomic: TGCTTGACGAAGCCATCCATTATGTCAAATTCCTGCAGCAACAACTTCAGgtccgatctc ... tgttcaacagACGTTGGAGCAGATTGGAAACATGAGCGATCCGAGGTTCATGGCGCAGCCG
EST: TGCTTGACGAAGCCATCCATTATGTCAAATTCCTGCAGCAACAACTTCAG ACGTTGGAGCAGATTGGAAACATGAGCGATCCGAGGTTCATGGCGCAGCCG
genomic: TGCTTGACGAAGCCATCCATTATGTCAAATTCCTGCAGCAACAACTTCAGgtccgatctc ... tgttcaacagACGTTGGAGCAGATTGGAAACATGAGCGATCCGAGGTTCATGGCGCAGCCG
agaattgcgtttgtggcactgttccgagaactaagtcgaatttcgtgttcaacagACGTTGGAGCAGATTGGAAACATGAGCGATCCGAGGTTCATGGCGCAGCCGGGTGGTCCGATGATGATGCCGCAAATGGGAGCCATGAATGCTGTGAGCC
aattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgatctcagattcagtgcaaatctcgaatttgtagtatgctttagccatgccgtatctttgatggggaagatttgtcaccttggagataaagaattgcgtttgtggcactgttccgagaactaagtcgaatttcgtgttcaacagACGTTGGAGCAGATTGGAAACATGAGCGATCCGAGGTTCATGGCGCAGCCGGGTGGTCCGATGATGATGCCGCAAATGGGAGCCATGAATGCTGTGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG