1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtttccatcgtcagtcgtttgggttgagatttgtgggtcacttggtgcacctgttgtcgatgtgctcaattgttaacaatatttcgtcatggaaaatcagGATCGGAGTGGACGACATCCCCATCCGCGTGTTCAAAAACAACGAGCAGTATGGTCTCCCATACTTTAACAAAGGACAAGGATTGTACGTCTCTTACTGG
species | Physcomitrella patens |
transcript | PP1S48_131V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCGACGATTACCACGAATACTACATTCTCTGGAATTCGGCAATGGTTGT GATCGGAGTGGACGACATCCCCATCCCGCGTGTTCAAAAACAACGAGCAGTEST: gi|67576776|gb|BJ949600.1|BJ949600
genomic: TGCGACGATTACCACGAATACTACATTCTCTGGAATTCGGCAATGGTTGTgtaagtttcc ... ggaaaatcagGATCGGAGTGGACGACATCCCCAT-CCGCGTGTTCAAAAACAACGAGCAGT
EST: TTACCACGAATACTACATTCTCTGGAATTCGGCAATGGTTGT GATCGGAGTGGACGACATCCCCATCCGCGTGTTCAAAAACAACGAGCAGTA
genomic: TTACCACGAATACTACATTCTCTGGAATTCGGCAATGGTTGTgtaagtttcc ... ggaaaatcagGATCGGAGTGGACGACATCCCCATCCGCGTGTTCAAAAACAACGAGCAGTA
tgcacctgttgtcgatgtgctcaattgttaacaatatttcgtcatggaaaatcagGATCGGAGTGGACGACATCCCCATCCGCGTGTTCAAAAACAACGAGCAGTATGGTCTCCCATACTTTAACAAAGGACAAGGATTGTACGTCTCTTACTGG
tgttaac putative branch site (score: 2)
aattgttaacaatatt TA-rich tract