1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctattcaggatcttattcgtctagagaagctgatagcttgtgtggatttacttactcaggaactaatctcagagctcccttttttctcgttttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGGATAAACACAGACGAAGGGGGTGAAGCAGCACTTACACCTAAAGACCATG
species | Physcomitrella patens |
transcript | PP1S488_11V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAG GCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGGEST: gi|162239902|gb|FC415741.1|FC415741
genomic: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAGgttgatgtca ... tttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGG
EST: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAG GCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCAGGGTGGEST: gi|208376880|gb|DC906835.1|DC906835
genomic: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAGgttgatgtca ... tttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGG
EST: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAG GCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTTACCGGGGTGEST: gi|37841248|gb|BJ599256.1|BJ599256
genomic: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAGgttgatgtca ... tttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTT-ACCGGGGTG
EST: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAG GCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGGEST: gi|162262858|gb|FC439277.1|FC439277
genomic: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAGgttgatgtca ... tttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGG
EST: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAG GCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGGEST: gi|162262857|gb|FC439276.1|FC439276
genomic: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAGgttgatgtca ... tttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGG
EST: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAG GCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGGEST: gi|208362168|gb|DC943553.1|DC943553
genomic: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAGgttgatgtca ... tttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGG
EST: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAG GCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGGEST: gi|208389421|gb|DC953259.1|DC953259
genomic: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAGgttgatgtca ... tttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGG
EST: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAG GCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGGEST: gi|67575819|gb|BJ948643.1|BJ948643
genomic: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAGgttgatgtca ... tttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGG
EST: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAG GCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGG
genomic: CAGGCTATAGCGCTTCGAAAGCTGGTCTCTGTGGCCTAACGCATTCACAGgttgatgtca ... tttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGG
atttacttactcaggaactaatctcagagctcccttttttctcgttttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGGATAAACACAGACGAAGGGGGTGAAGCAGCACTTACACCTAAAGACCATG
ctcccttttttctcgt CT-rich tract
ttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctattcaggatcttattcgtctagagaagctgatagcttgtgtggatttacttactcaggaactaatctcagagctcccttttttctcgttttctggcagGCTATAACTTACGCAGGCAAAGTACGAGTGAACACAGTGTTACCGGGGTGGATAAACACAGACGAAGGGGGTGAAGCAGCACTTACACCTAAAGACCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC