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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacaatttagactcacagttattcttcccgttaaagaacctacatgtcagctcccatcgattaaaagctgccacttcttggcttcaatcgtgttctccagGGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGGGCGATGTGAAGGCGGATGCTTGCCTAAAAGCTCTAGCCAAAATCCGGAA

Basic information

species Physcomitrella patens
transcript PP1S486_3V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37824768|gb|BJ582834.1|BJ582834
EST:     CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATG                         GGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG
genomic: CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATGgtgcgcattc ... tgttctccagGGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG
EST: gi|37821053|gb|BJ579119.1|BJ579119
EST:     CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATG                         GGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG
genomic: CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATGgtgcgcattc ... tgttctccagGGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG
EST: gi|208352831|gb|DC917795.1|DC917795
EST:     CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATG                         GGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG
genomic: CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATGgtgcgcattc ... tgttctccagGGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG
EST: gi|37835516|gb|BJ593528.1|BJ593528
EST:     CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATG                         GGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG
genomic: CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATGgtgcgcattc ... tgttctccagGGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG
EST: gi|37826358|gb|BJ584370.1|BJ584370
EST:     CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATG                         GGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG
genomic: CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATGgtgcgcattc ... tgttctccagGGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG
EST: gi|208381045|gb|DC903901.1|DC903901
EST:     CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATG                         GGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG
genomic: CTGTGAGGCATGTGTGAAAAAAGTTCGGCGAATTCTCATCGAGCTCGATGgtgcgcattc ... tgttctccagGGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcagctcccatcgattaaaagctgccacttcttggcttcaatcgtgttctccagGGGTGAGCAGCATCATCGTCAACGTCCCTACCAAGAAGGTTACTGTCACGGGCGATGTGAAGGCGGATGCTTGCCTAAAAGCTCTAGCCAAAATCCGGAA
                                             tgttctcc  CT-rich tract
              attaaaa  TA-rich tract