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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctgtttatcttttatttagcatgcttggagttaaatttaaaatgctctttgattggtaatttaagatatggcttttggatttgtcagaagtgctttcctggcgtaacctatcgctatccgaatgcagaggttatgacgctcctcttctggaagtatttgcttgggagtaagtattgacatgtggtctgaatagGGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATTTTACGGCGAAGCCTGCGTTTTACAGGCAGGCATAGCCGCTGCGTCAGTG

Basic information

species Physcomitrella patens
transcript PP1S47_78V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100385731|gb|BY987796.1|BY987796
EST:     TTCA-CATGATAAAAAGTCTTCCGGCTGAGGGTGATTGGGAACTAGAATG                         GGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATT
genomic: T-CAACATGATAAAAAGTCTTCCGGCTGAGGTTGATTGGGAACTAGAATGgtaatctgtt ... gtctgaatagGGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATT
EST: gi|208387521|gb|DC933384.1|DC933384
EST:     TTCAACATGATAAAAAGTCTTCCGGCTGAGGTTGATTGGGAACTANAATG                         GGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATT
genomic: TTCAACATGATAAAAAGTCTTCCGGCTGAGGTTGATTGGGAACTAGAATGgtaatctgtt ... gtctgaatagGGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATT
EST: gi|100414748|gb|BY956844.1|BY956844
EST:     TCAACATGATAAAA-GTCTTCCGGCTGNAG-TTGATTGGGAACTAGAATG                         GGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGC
genomic: TCAACATGATAAAAAGTCTTCCGGCTG-AGGTTGATTGGGAACTAGAATGgtaatctgtt ... gtctgaatagGGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctcttctggaagtatttgcttgggagtaagtattgacatgtggtctgaatagGGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATTTTACGGCGAAGCCTGCGTTTTACAGGCAGGCATAGCCGCTGCGTCAGTG
                                 tattgac  putative branch site (score: 2)
 aagtattt  TA-rich tract