1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatctgtttatcttttatttagcatgcttggagttaaatttaaaatgctctttgattggtaatttaagatatggcttttggatttgtcagaagtgctttcctggcgtaacctatcgctatccgaatgcagaggttatgacgctcctcttctggaagtatttgcttgggagtaagtattgacatgtggtctgaatagGGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATTTTACGGCGAAGCCTGCGTTTTACAGGCAGGCATAGCCGCTGCGTCAGTG
species | Physcomitrella patens |
transcript | PP1S47_78V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCA-CATGATAAAAAGTCTTCCGGCTGAGGGTGATTGGGAACTAGAATG GGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATTEST: gi|208387521|gb|DC933384.1|DC933384
genomic: T-CAACATGATAAAAAGTCTTCCGGCTGAGGTTGATTGGGAACTAGAATGgtaatctgtt ... gtctgaatagGGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATT
EST: TTCAACATGATAAAAAGTCTTCCGGCTGAGGTTGATTGGGAACTANAATG GGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATTEST: gi|100414748|gb|BY956844.1|BY956844
genomic: TTCAACATGATAAAAAGTCTTCCGGCTGAGGTTGATTGGGAACTAGAATGgtaatctgtt ... gtctgaatagGGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATT
EST: TCAACATGATAAAA-GTCTTCCGGCTGNAG-TTGATTGGGAACTAGAATG GGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGC
genomic: TCAACATGATAAAAAGTCTTCCGGCTG-AGGTTGATTGGGAACTAGAATGgtaatctgtt ... gtctgaatagGGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGC
ctcctcttctggaagtatttgcttgggagtaagtattgacatgtggtctgaatagGGTCTGGGAGTCACTAAGGAATACCACTCGTACTAAGGCGCTAGTGATATTTTACGGCGAAGCCTGCGTTTTACAGGCAGGCATAGCCGCTGCGTCAGTG
tattgac putative branch site (score: 2)
aagtattt TA-rich tract