Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttaaatacttccactctgatcctggttgttttataaactccttttgccatgagccatggagtattgaaagtcatgcggtataacacttgtgagtctcatggacatacagtatcttgataccctctctgtataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTCCGCAACATGATCATTGTTCCAGAGATGATCGGTAGCGTCATTGGTGTGT

Basic information

species Physcomitrella patens
transcript PP1S47_42V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S47_42V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA05G35030.1 (Glycine max), 3'ss of exon 2
gtacgttaaatacttccactctgatcctggttgttttataaactccttttgccatgagccatggagtattgaaagtcatgcggtataacacttgtgagtctcatggacatacagtatcttgataccctctctgtataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTCCGCAACATGATCATTGTTCCAGAGATGATCGGTAGCGTCATTGGTGTGT
                                              || ||   |  |  ||||| ||| ||   | ||    | | |   ||    ||   |      |    |   |    | ||| ||||| |  |  |||||| | || || ||  | ||||||||||| || |||||  | || ||||||||||||||||| ||||| || |||||||| |||||| | ||||| ||||
--------------------------------------------tattctgttgtttgagatggattatagatgtttatttcctgtgaggtttaattgtaggaaatgacttgtctgcttaacaatcctttctgttttttcacagAAAAGAGAAGCTCCACCAGGTGAGAAGCCAGAACCTGTCCGCACCCACCTCCGCAACATGATTATTGTGCCTGAGATGATTGGTAGCATTATTGGAGTGT

upper sequence: PP1S47_42V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA07G39980.1 (Glycine max), 3'ss of exon 2
gtacgttaaatacttccactctgatcctggttgttttataaactccttttgccatgagccatggagtattgaaagtcatgcggtataacacttgtgagtctcatggacatacagtatcttgataccctctctgtataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTCCGCAACATGATCATTGTTCCAGAGATGATCGGTAGCGTCATTGGTGTGT
                                                                 ||||| |   ||   | || |     || |   | |  ||   ||    |   ||     | | |   |  |||   ||||| | || ||||| || ||||||||||| || || ||  | || || |||||||||||||| ||||| || |||||||| |||||| ||||||| || |
-------------------------------------------------------------gtatgtatttattttctgtctgtgttcattttat---ttttctgtctatgatatcaatttgcttcattttgatggaat---agAAAAGGGAAGCACCAGCAGGTGAGAAGCCAGAACCAGTTCGCACCCATCTCCGCAACATGATTATTGTGCCTGAGATGATTGGTAGCATCATTGGAGTCT

upper sequence: PP1S47_42V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA08G04690.1 (Glycine max), 3'ss of exon 1
gtacgttaaatacttccactctgatcctggttgttttataaactccttttgccatgagccatggagtattgaaagtcatgcggtataacacttgtgagtctcatggacatacagtatcttgataccctctctgtataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTCCGCAACATGATCATTGTTCCAGAGATGATCGGTAGCGTCATTGGTGTGT
                                               ||||  |||    || ||   |||       ||  || |||   | |  | |  | |     |  |  |     ||| ||| | ||| |  |  |||||| | || || ||  | ||||||||||| || || ||  | || ||||||||||||||||| ||||| || |||||||| |||||| | ||||| ||||
------------------------------------------tgttgtttgagatggattatagatatttgttttctgtgaagtttaattgtaggaattagcttctctgtttaacaatc--atatcctttttgtttggtcacagAAAAGGGAAGCTCCACCAGGTGAGAAGCCAGAACCAGTACGCACCCACCTCCGCAACATGATTATTGTGCCTGAGATGATTGGTAGCATTATTGGAGTGT

upper sequence: PP1S47_42V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv07s0141g00710.t01 (Vitis vinifera), 3'ss of exon 3
gtacgttaaatacttccactctgatcctggttgttttataaactccttttgccatgagccatggagtattgaaagtcatgcggtataacacttgtgagt-ctcatggacatacagtatcttgataccctctctgtataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTCCGCAACATGATCATTGTTCCAGAGATGATCGGTAGCGTCATTGGTGTGT
                                      | || |  | |||  ||||   ||  ||| | | || |||    | |    | | | || |  ||||  | ||     || ||| |    |   ||| | |   |||||||| ||||||||  |||||||||| || ||||| || || || |||||||||||||||||||| || || || ||||| || ||| |  |||| || |
------------------------------------ctttaatttgtattg--atgattaatc-agtttagtaaatcacaaagga----agtggggattattcattaatatttt-cattttggtgttgtga-tgtcttaaaacagAAACGGGAGGCACCACCTGGTGAGAAACCAGAGCCAGTTAGAACTCACCTCCGCAACATGATCATAGTACCTGAAATGATTGGCAGCATTGTTGGGGTTT

upper sequence: PP1S47_42V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ26930 (Selaginella moellendorffii), 3'ss of exon 2
gtacgttaaatacttccactctgatcctggttgttttataaactccttttgccatgagccatggagtattgaaagtcatgcggtataacacttgtgagtctcatggacatacagtatcttgataccctctctgtataat-tgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTCCGCAACATGATCATTGTTCCAGAGATGATCGGTAGCGTCATTGGTGTGT
                                                                                  |||      | |    | || | |   | |  | |  | ||    ||  ||| |  |  | ||||||||||||| || |||||||||||||| ||||| ||| | || || ||||| | ||||||||| || ||||||||||| || ||| ||||||| || |
----------------------------------------------------------------------------------gtaagttcatcgatcttttctttgttttgc--ttttcttattgattccttgtgtcctgcgtagAAACGTGAGGCCCCGGCTGGTGAGAAGCCCGAGCCAGTGCGAACGCATCTCCGGAGCATGATCATCGTCCCAGAGATGATTGGCAGCATCATTGGCGTCT

upper sequence: PP1S47_42V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ26636 (Selaginella moellendorffii), 3'ss of exon 2
gtacgttaaatacttccactctgatcctggttgttttataaactccttttgccatgagccatggagtattgaaagtcatgcggtataacacttgtgagtctcatggacata-cagtatcttgataccctctctgtataat-tgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTCCGCAACATGATCATTGTTCCAGAGATGATCGGTAGCGTCATTGGTGTGT
                                                                                     |||   |  |   |||  |     |  |  | |  | ||    ||  ||| |  |  | ||||||||||||| || |||||||||||||| ||||| ||| | || || ||||| | ||||||||| || ||||||||||| || ||| ||||||| || |
------------------------------------------------------------------------------------gtaa-gttcatcgatcttttctttgtttctcttttcttattgattccttgtgtcttgcgtagAAACGTGAGGCCCCGGCTGGTGAGAAGCCCGAGCCAGTGCGAACGCATCTCCGGAGCATGATCATCGTCCCAGAGATGATTGGCAGCATCATTGGCGTCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6102252|gb|AW126722.1|AW126722
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|7067374|gb|AW497229.1|AW497229
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162227580|gb|FC403522.1|FC403522
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162221576|gb|FC397593.1|FC397593
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67702997|gb|BJ963230.1|BJ963230
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|7147695|gb|AW509666.1|AW509666
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162227187|gb|FC403844.1|FC403844
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162221336|gb|FC398120.1|FC398120
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162233580|gb|FC410962.1|FC410962
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67701344|gb|BJ961577.1|BJ961577
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67724173|gb|BJ974432.1|BJ974432
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|7046944|gb|AW476781.1|AW476781
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162264291|gb|FC441393.1|FC441393
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162277884|gb|FC454347.1|FC454347
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162215437|gb|FC391933.1|FC391933
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162232848|gb|FC407501.1|FC407501
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCG                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|19790792|gb|BQ042057.1|BQ042057
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGAGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67726407|gb|BJ976666.1|BJ976666
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|7067085|gb|AW496940.1|AW496940
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|208348761|gb|DC909796.1|DC909796
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|7207504|gb|AW561504.1|AW561504
EST:     GTGGGCTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         CAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162239764|gb|FC417163.1|FC417163
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67578444|gb|BJ950611.1|BJ950611
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|19783351|gb|BQ039997.1|BQ039997
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|7067375|gb|AW497230.1|AW497230
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|208385042|gb|DC911330.1|DC911330
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162259872|gb|FC436007.1|FC436007
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|15262097|gb|BI437407.1|BI437407
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|6167045|gb|AW145364.1|AW145364
EST:     GAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162248361|gb|FC419755.1|FC419755
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|15327504|gb|BI488258.1|BI488258
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67577697|gb|BJ949864.1|BJ949864
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67717901|gb|BJ968160.1|BJ968160
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162234864|gb|FC409311.1|FC409311
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162235948|gb|FC411691.1|FC411691
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67704304|gb|BJ964537.1|BJ964537
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGA
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGA
EST: gi|6167554|gb|AW145818.1|AW145818
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162277883|gb|FC454346.1|FC454346
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67710246|gb|BJ965909.1|BJ965909
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|7207481|gb|AW561482.1|AW561482
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162199029|gb|FC372380.1|FC372380
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162254108|gb|FC429632.1|FC429632
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162227581|gb|FC403523.1|FC403523
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|208400853|gb|DC925133.1|DC925133
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162225347|gb|FC401164.1|FC401164
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162218517|gb|FC395094.1|FC395094
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162261488|gb|FC438324.1|FC438324
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67717312|gb|BJ967571.1|BJ967571
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67700571|gb|BJ960804.1|BJ960804
EST:     TTGAAGCGCAAGCCGATGGCTTNTTATCAAGAAGCTGCGCAAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCT
genomic: TTGAAGCGCAAGCCGATGGC-TCTTATCAAGAAGCTGCGC-AAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCT
EST: gi|162264292|gb|FC441394.1|FC441394
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162227186|gb|FC403843.1|FC403843
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162259873|gb|FC436008.1|FC436008
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|7147889|gb|AW509811.1|AW509811
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|162234863|gb|FC409310.1|FC409310
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
EST: gi|67725829|gb|BJ976088.1|BJ976088
EST:     GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA                         AAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC
genomic: GTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 102

GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCAgtacgttaaa ... ataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTCCGCAACATGATCATTGTTCCAGAGATGATCGGTAGCGTCATTGGTGTGT




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgtgagtctcatggacatacagtatcttgataccctctctgtataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTCCGCAACATGATCATTGTTCCAGAGATGATCGGTAGCGTCATTGGTGTGT
                           tcttgat  putative branch site (score: 102)
                                          tgtataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgttaaatacttccactctgatcctggttgttttataaactccttttgccatgagccatggagtattgaaagtcatgcggtataacacttgtgagtctcatggacatacagtatcttgataccctctctgtataattgcagAAACGTGAGGCACCTGCTGGTGAGAAGCCTGAGCCTGTGAGGACACACCTCCGCAACATGATCATTGTTCCAGAGATGATCGGTAGCGTCATTGGTGTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG