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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattttttgtttttatgtatttgagttaggatttgagttagctgtaggagttgtgttagagaacatcgttacgaccatttgtcttggctctggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG

Basic information

species Physcomitrella patens
transcript PP1S47_221V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162162945|gb|FC338142.1|FC338142
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162267227|gb|FC442639.1|FC442639
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162178892|gb|FC354824.1|FC354824
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162227780|gb|FC402396.1|FC402396
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162197234|gb|FC372534.1|FC372534
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162251200|gb|FC428479.1|FC428479
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|100401256|gb|BY990911.1|BY990911
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|67694460|gb|BJ954693.1|BJ954693
EST:     ACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: ACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|67701242|gb|BJ961475.1|BJ961475
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162278834|gb|FC454885.1|FC454885
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGATTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|67696785|gb|BJ957018.1|BJ957018
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162227779|gb|FC402395.1|FC402395
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162155600|gb|FC331538.1|FC331538
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162162944|gb|FC338141.1|FC338141
EST:     GTCACTCTT-ACAGATTTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: GTCACTCTTAACAGA-TTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|100376173|gb|BY968329.1|BY968329
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGAT
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGAT
EST: gi|37826268|gb|BJ584280.1|BJ584280
EST:     TGTCACTTTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162195536|gb|FC371837.1|FC371837
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|37836459|gb|BJ594467.1|BJ594467
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCNTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162251201|gb|FC428480.1|FC428480
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162232573|gb|FC408916.1|FC408916
EST:     CCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: CCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162189471|gb|FC365485.1|FC365485
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|208385121|gb|DC923543.1|DC923543
EST:     ATTACGAAACCGCAGCTCATTACNTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: ATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|37838819|gb|BJ596827.1|BJ596827
EST:     CAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: CAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|37851393|gb|BJ609401.1|BJ609401
EST:     TTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|37841160|gb|BJ599168.1|BJ599168
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162189470|gb|FC365484.1|FC365484
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162232574|gb|FC408917.1|FC408917
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|37828312|gb|BJ586324.1|BJ586324
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162229810|gb|FC404263.1|FC404263
EST:     GTCACTCTTAACAGATTACGAAACCGCAGCTCATTACC-TGNACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAG
genomic: GTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTG-ACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAG
EST: gi|208350796|gb|DC925927.1|DC925927
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|37821608|gb|BJ579674.1|BJ579674
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162252999|gb|FC429060.1|FC429060
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|67694069|gb|BJ954302.1|BJ954302
EST:     ACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: ACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162197233|gb|FC372533.1|FC372533
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|100435185|gb|BY979115.1|BY979115
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|37831174|gb|BJ589186.1|BJ589186
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|37824562|gb|BJ582628.1|BJ582628
EST:     CCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: CCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162156121|gb|FC332288.1|FC332288
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|37844642|gb|BJ602650.1|BJ602650
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|67578357|gb|BJ950524.1|BJ950524
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGANTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|208360641|gb|DC957866.1|DC957866
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|7067000|gb|AW496855.1|AW496855
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTCTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162274482|gb|FC450717.1|FC450717
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|162253000|gb|FC429061.1|FC429061
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|7147954|gb|AW509876.1|AW509876
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCNAACATGGAATGATATTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
EST: gi|67693517|gb|BJ953750.1|BJ953750
EST:     TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAG                         ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG
genomic: TGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 34 (downstream exon)
Score: 43

CCGCTTCCCTCCAATTCAGGCACGCGAGCTCCCTTACTTGGAATGCACGGTGTCACTCTTAACAGATTACGAAACCGCAGCTCATTACCTTGACTGGGAGgtacgcagga ... tggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggagttgtgttagagaacatcgttacgaccatttgtcttggctctggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG
                                                atttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattttttgtttttatgtatttgagttaggatttgagttagctgtaggagttgtgttagagaacatcgttacgaccatttgtcttggctctggattttagATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG