1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgtgtggtctaatctctatatgtcactaattttgaacttacttttcaacttgtaggctaataatttatttcttgggttgaaaatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTACAAAGATCATCGTTTCAAATCATAATTGGGACTTTACCCCTTCAGACG
species | Physcomitrella patens |
transcript | PP1S47_18V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTEST: gi|162229412|gb|FC405603.1|FC405603
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: GGCGCCGACTATATTGATGTTGAGTTAAAG GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTEST: gi|18355442|gb|BJ187501.1|BJ187501
genomic: GGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTEST: gi|18325007|gb|BJ157003.1|BJ157003
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTEST: gi|18344020|gb|BJ176059.1|BJ176059
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTEST: gi|162172646|gb|FC348027.1|FC348027
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTEST: gi|162158873|gb|FC335396.1|FC335396
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTEST: gi|162173166|gb|FC349233.1|FC349233
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: ATTGATGTTGAGTTAAAG GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTEST: gi|18349013|gb|BJ181062.1|BJ181062
genomic: ATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTEST: gi|162179654|gb|FC355712.1|FC355712
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTEST: gi|18373250|gb|BJ204852.1|BJ204852
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
EST: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAG GTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
genomic: TGCGAATGGCTTATGATCTGGGCGCCGACTATATTGATGTTGAGTTAAAGgtgtgtggtc ... aatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACT
cttacttttcaacttgtaggctaataatttatttcttgggttgaaaatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTACAAAGATCATCGTTTCAAATCATAATTGGGACTTTACCCCTTCAGACG
taataatttatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtggtctaatctctatatgtcactaattttgaacttacttttcaacttgtaggctaataatttatttcttgggttgaaaatcccacagGTAGCTGGAGGATTCATCCAAGAGTTGAGAAGTAGAGGTAAAGACTCCACTACAAAGATCATCGTTTCAAATCATAATTGGGACTTTACCCCTTCAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA